Analysis of interatomic Contacts of Structural Units in PDB entry:
6W8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W8T entry

There are 2 chains in PDB entry 6W8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2CYS 418
B
 THR 2CYS 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6W8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 36Right-handed alpha
Helix 2
AA2
A
40 42Right-handed 310
Helix 3
AA3
A
58 72Right-handed alpha
Helix 4
AA4
A
116 124Right-handed alpha
Helix 5
AA5
A
228 240Right-handed alpha
Helix 6
AA6
A
249 258Right-handed alpha
Helix 7
AA7
A
263 278Right-handed alpha
Helix 8
AA8
A
283 292Right-handed alpha
Helix 9
AA9
A
293 302Right-handed alpha
Helix 10
AB1
A
305 314Right-handed alpha
Helix 11
AB2
A
319 324Right-handed 310
Helix 12
AB3
A
365 377Right-handed alpha
Helix 13
AB4
A
382 398Right-handed alpha
Helix 14
AB5
B
21 36Right-handed alpha
Helix 15
AB6
B
40 42Right-handed 310
Helix 16
AB7
B
58 72Right-handed alpha
Helix 17
AB8
B
116 124Right-handed alpha
Helix 18
AB9
B
228 240Right-handed alpha
Helix 19
AC1
B
249 258Right-handed alpha
Helix 20
AC2
B
263 278Right-handed alpha
Helix 21
AC3
B
283 292Right-handed alpha
Helix 22
AC4
B
293 302Right-handed alpha
Helix 23
AC5
B
305 314Right-handed alpha
Helix 24
AC6
B
319 324Right-handed 310
Helix 25
AC7
B
358 362Right-handed 310
Helix 26
AC8
B
365 377Right-handed alpha
Helix 27
AC9
B
382 398Right-handed alpha
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There are 6 sheets in PDB entry 6W8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
3 9parallel
Strand 3
A
78 84parallel
Strand 4
A
131 137parallel
Strand 5
A
339 342parallel
Strand 6
A
404 406anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
102 106anti-parallel
Strand 3
A
114 115anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
219 224anti-parallel
Strand 3
A
351 355anti-parallel
Strand 4
A
363 364anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 48first strand
Strand 2
B
3 9parallel
Strand 3
B
78 84parallel
Strand 4
B
131 137parallel
Strand 5
B
339 342parallel
Strand 6
B
404 406anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 91first strand
Strand 2
B
102 107anti-parallel
Strand 3
B
114 115anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 353first strand
Strand 2
B
363 364anti-parallel
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