Analysis of interatomic Contacts of Structural Units in PDB entry:
6W8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W8W entry

There are 2 chains in PDB entry 6W8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 732	SER 1600
B	ASP 732	ARG 1237

There are 57 helices in PDB entry 6W8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	808	812	Right-handed 310
Helix 2	AA2	A	829	831	Right-handed 310
Helix 3	AA3	A	845	849	Right-handed 310
Helix 4	AA4	A	897	911	Right-handed alpha
Helix 5	AA5	A	975	980	Right-handed 310
Helix 6	AA6	A	1026	1030	Right-handed 310
Helix 7	AA7	A	1032	1037	Right-handed 310
Helix 8	AA8	A	1057	1059	Right-handed 310
Helix 9	AA9	A	1069	1071	Right-handed 310
Helix 10	AB1	A	1074	1080	Right-handed alpha
Helix 11	AB2	A	1103	1107	Right-handed 310
Helix 12	AB3	A	1152	1161	Right-handed alpha
Helix 13	AB4	A	1173	1184	Right-handed alpha
Helix 14	AB5	A	1193	1203	Right-handed alpha
Helix 15	AB6	A	1244	1248	Right-handed alpha
Helix 16	AB7	A	1249	1262	Right-handed alpha
Helix 17	AB8	A	1273	1276	Right-handed 310
Helix 18	AB9	A	1280	1293	Right-handed alpha
Helix 19	AC1	A	1305	1308	Right-handed 310
Helix 20	AC2	A	1338	1342	Right-handed 310
Helix 21	AC3	A	1369	1375	Right-handed alpha
Helix 22	AC4	A	1397	1405	Right-handed alpha
Helix 23	AC5	A	1421	1430	Right-handed alpha
Helix 24	AC6	A	1438	1442	Right-handed 310
Helix 25	AC7	A	1479	1484	Right-handed 310
Helix 26	AC8	A	1500	1505	Right-handed alpha
Helix 27	AC9	A	1509	1513	Right-handed 310
Helix 28	AD1	A	1551	1559	Right-handed alpha
Helix 29	AD2	A	1570	1580	Right-handed alpha
Helix 30	AD3	A	1583	1599	Right-handed alpha
Helix 31	AD4	B	808	812	Right-handed 310
Helix 32	AD5	B	897	911	Right-handed alpha
Helix 33	AD6	B	975	980	Right-handed 310
Helix 34	AD7	B	1026	1030	Right-handed 310
Helix 35	AD8	B	1032	1037	Right-handed alpha
Helix 36	AD9	B	1057	1059	Right-handed 310
Helix 37	AE1	B	1074	1080	Right-handed alpha
Helix 38	AE2	B	1103	1107	Right-handed 310
Helix 39	AE3	B	1152	1161	Right-handed alpha
Helix 40	AE4	B	1173	1184	Right-handed alpha
Helix 41	AE5	B	1193	1203	Right-handed alpha
Helix 42	AE6	B	1244	1249	Right-handed alpha
Helix 43	AE7	B	1249	1261	Right-handed alpha
Helix 44	AE8	B	1273	1276	Right-handed 310
Helix 45	AE9	B	1280	1293	Right-handed alpha
Helix 46	AF1	B	1305	1308	Right-handed 310
Helix 47	AF2	B	1338	1342	Right-handed 310
Helix 48	AF3	B	1370	1375	Right-handed alpha
Helix 49	AF4	B	1397	1405	Right-handed alpha
Helix 50	AF5	B	1421	1430	Right-handed alpha
Helix 51	AF6	B	1438	1442	Right-handed 310
Helix 52	AF7	B	1479	1484	Right-handed 310
Helix 53	AF8	B	1500	1505	Right-handed alpha
Helix 54	AF9	B	1506	1513	Right-handed 310
Helix 55	AG1	B	1551	1559	Right-handed alpha
Helix 56	AG2	B	1570	1581	Right-handed alpha
Helix 57	AG3	B	1583	1599	Right-handed alpha

There are 20 sheets in PDB entry 6W8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	737	first strand
Strand 2	A	752	755	anti-parallel
Strand 3	A	760	761	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	749	first strand
Strand 2	A	786	788	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	834	835	first strand
Strand 2	A	765	768	anti-parallel
Strand 3	A	778	782	anti-parallel
Strand 4	A	794	802	anti-parallel
Strand 5	A	816	827	anti-parallel
Strand 6	A	867	874	parallel
Strand 7	A	837	839	parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	834	835	first strand
Strand 2	A	765	768	anti-parallel
Strand 3	A	778	782	anti-parallel
Strand 4	A	794	802	anti-parallel
Strand 5	A	816	827	anti-parallel
Strand 6	A	867	874	parallel
Strand 7	A	879	881	anti-parallel
Strand 8	A	1296	1303	anti-parallel
Strand 9	A	1314	1321	anti-parallel
Strand 10	A	1265	1271	anti-parallel
Strand 11	A	1222	1225	parallel
Strand 12	A	1142	1147	parallel
Strand 13	A	1164	1170	parallel
Strand 14	A	1188	1190	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	913	921	first strand
Strand 2	A	924	932	anti-parallel
Strand 3	A	996	1008	anti-parallel
Strand 4	A	1011	1025	anti-parallel
Strand 5	A	1046	1055	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	938	first strand
Strand 2	A	924	932	anti-parallel
Strand 3	A	996	1008	anti-parallel
Strand 4	A	942	945	anti-parallel
Strand 5	A	1061	1067	anti-parallel
Strand 6	A	1085	1088	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1091	1092	first strand
Strand 2	A	1099	1100	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1346	1348	first strand
Strand 2	A	1351	1353	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1388	1390	first strand
Strand 2	A	1411	1413	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1447	1448	first strand
Strand 2	A	1454	1455	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	737	first strand
Strand 2	B	752	755	anti-parallel
Strand 3	B	758	761	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	831	835	first strand
Strand 2	B	765	768	anti-parallel
Strand 3	B	778	784	anti-parallel
Strand 4	B	794	802	anti-parallel
Strand 5	B	816	827	anti-parallel
Strand 6	B	868	874	parallel
Strand 7	B	838	839	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	831	835	first strand
Strand 2	B	765	768	anti-parallel
Strand 3	B	778	784	anti-parallel
Strand 4	B	794	802	anti-parallel
Strand 5	B	816	827	anti-parallel
Strand 6	B	868	874	parallel
Strand 7	B	879	881	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	921	first strand
Strand 2	B	924	932	anti-parallel
Strand 3	B	996	1008	anti-parallel
Strand 4	B	1011	1023	anti-parallel
Strand 5	B	1051	1055	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	938	first strand
Strand 2	B	924	932	anti-parallel
Strand 3	B	996	1008	anti-parallel
Strand 4	B	942	945	anti-parallel
Strand 5	B	1061	1067	anti-parallel
Strand 6	B	1085	1088	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1091	1093	first strand
Strand 2	B	1098	1100	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1188	1190	first strand
Strand 2	B	1164	1170	parallel
Strand 3	B	1142	1147	parallel
Strand 4	B	1222	1225	parallel
Strand 5	B	1265	1271	parallel
Strand 6	B	1314	1321	anti-parallel
Strand 7	B	1296	1303	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1346	1348	first strand
Strand 2	B	1351	1353	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1388	1390	first strand
Strand 2	B	1411	1413	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1447	1448	first strand
Strand 2	B	1454	1455	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W8W