Analysis of interatomic Contacts of Structural Units in PDB entry:
6W98

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6W98 entry

There are 2 chains in PDB entry 6W98 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	PRO 1391
B	SER 1	ALA 77

There are 45 helices in PDB entry 6W98. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	27	Right-handed alpha
Helix 2	AA2	A	40	45	Right-handed alpha
Helix 3	AA3	A	45	53	Right-handed alpha
Helix 4	AA4	A	70	74	Right-handed 310
Helix 5	AA5	A	75	88	Right-handed alpha
Helix 6	AA6	A	90	118	Right-handed alpha
Helix 7	AA7	A	123	134	Right-handed alpha
Helix 8	AA8	A	135	143	Right-handed alpha
Helix 9	AA9	A	145	148	Right-handed 310
Helix 10	AB1	A	149	167	Right-handed alpha
Helix 11	AB2	A	171	186	Right-handed alpha
Helix 12	AB3	A	190	198	Right-handed alpha
Helix 13	AB4	A	198	207	Right-handed alpha
Helix 14	AB5	A	211	243	Right-handed alpha
Helix 15	AB6	A	261	268	Right-handed alpha
Helix 16	AB7	A	288	308	Right-handed alpha
Helix 17	AB8	A	314	328	Right-handed alpha
Helix 18	AB9	A	358	361	Right-handed 310
Helix 19	AC1	A	362	378	Right-handed alpha
Helix 20	AC2	A	405	419	Right-handed alpha
Helix 21	AC3	A	419	424	Right-handed alpha
Helix 22	AC4	A	437	450	Right-handed alpha
Helix 23	AC5	A	475	481	Right-handed alpha
Helix 24	AC6	A	495	512	Right-handed alpha
Helix 25	AC7	A	517	525	Right-handed alpha
Helix 26	AC8	A	545	555	Right-handed alpha
Helix 27	AC9	A	581	583	Right-handed 310
Helix 28	AD1	A	618	620	Right-handed 310
Helix 29	AD2	A	621	632	Right-handed alpha
Helix 30	AD3	A	728	737	Right-handed 310
Helix 31	AD4	A	934	940	Right-handed alpha
Helix 32	AD5	A	959	964	Right-handed 310
Helix 33	AD6	A	1091	1096	Right-handed alpha
Helix 34	AD7	A	1125	1130	Right-handed alpha
Helix 35	AD8	A	1254	1267	Right-handed alpha
Helix 36	AD9	A	1268	1278	Right-handed alpha
Helix 37	AE1	A	1295	1310	Right-handed alpha
Helix 38	AE2	A	1311	1328	Right-handed alpha
Helix 39	AE3	A	1331	1353	Right-handed alpha
Helix 40	AE4	A	1369	1385	Right-handed alpha
Helix 41	AE5	B	2	16	Right-handed alpha
Helix 42	AE6	B	18	22	Right-handed 310
Helix 43	AE7	B	35	51	Right-handed alpha
Helix 44	AE8	B	55	60	Right-handed alpha
Helix 45	AE9	B	64	75	Right-handed alpha

There are 14 sheets in PDB entry 6W98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	65	66	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	459	first strand
Strand 2	A	527	533	parallel
Strand 3	A	588	594	anti-parallel
Strand 4	A	560	568	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	579	first strand
Strand 2	A	1059	1061	parallel
Strand 3	A	1067	1069	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1181	1182	first strand
Strand 2	A	605	608	anti-parallel
Strand 3	A	1204	1211	anti-parallel
Strand 4	A	1235	1240	anti-parallel
Strand 5	A	1227	1231	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	642	first strand
Strand 2	A	614	615	parallel
Strand 3	A	656	659	parallel
Strand 4	A	873	877	parallel
Strand 5	A	1161	1170	anti-parallel
Strand 6	A	919	929	anti-parallel
Strand 7	A	1134	1138	anti-parallel
Strand 8	A	1116	1124	anti-parallel
Strand 9	A	1099	1102	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	704	708	first strand
Strand 2	A	857	862	anti-parallel
Strand 3	A	909	915	parallel
Strand 4	A	1149	1156	anti-parallel
Strand 5	A	1109	1112	anti-parallel
Strand 6	A	1116	1124	anti-parallel
Strand 7	A	1134	1138	anti-parallel
Strand 8	A	919	929	anti-parallel
Strand 9	A	1144	1146	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	714	first strand
Strand 2	A	757	766	anti-parallel
Strand 3	A	816	823	anti-parallel
Strand 4	A	786	791	anti-parallel
Strand 5	A	794	799	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	746	first strand
Strand 2	A	836	844	anti-parallel
Strand 3	A	769	775	anti-parallel
Strand 4	A	807	810	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	746	first strand
Strand 2	A	836	844	anti-parallel
Strand 3	A	852	854	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	886	887	first strand
Strand 2	A	894	895	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	946	948	first strand
Strand 2	A	986	1002	anti-parallel
Strand 3	A	1036	1055	anti-parallel
Strand 4	A	1013	1019	anti-parallel
Strand 5	A	1024	1028	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	946	948	first strand
Strand 2	A	986	1002	anti-parallel
Strand 3	A	1078	1080	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	972	973	first strand
Strand 2	A	1073	1074	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1192	1197	first strand
Strand 2	A	1246	1251	anti-parallel
Strand 3	A	1217	1219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6W98

Analysis of interatomic Contacts of Structural Units in PDB entry:
6W98