Analysis of interatomic Contacts of Structural Units in PDB entry:
6W9A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6W9A entry

There are 4 chains in PDB entry 6W9A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 48THR 201
B
 ARG 546LEU 615
C
 LYS 48THR 201
D
 ARG 546LEU 615
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6W9A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 70Right-handed alpha
Helix 2
AA2
A
140 144Right-handed 310
Helix 3
AA3
A
152 166Right-handed alpha
Helix 4
AA4
A
174 184Right-handed alpha
Helix 5
AA5
A
184 201Right-handed alpha
Helix 6
AA6
B
549 555Right-handed alpha
Helix 7
AA7
B
562 567Right-handed 310
Helix 8
AA8
B
594 604Right-handed alpha
Helix 9
AA9
C
49 70Right-handed alpha
Helix 10
AB1
C
140 144Right-handed 310
Helix 11
AB2
C
152 166Right-handed alpha
Helix 12
AB3
C
174 184Right-handed alpha
Helix 13
AB4
C
184 200Right-handed alpha
Helix 14
AB5
D
549 555Right-handed alpha
Helix 15
AB6
D
562 567Right-handed 310
Helix 16
AB7
D
594 604Right-handed alpha
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There are 6 sheets in PDB entry 6W9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
86 92anti-parallel
Strand 3
A
103 109anti-parallel
Strand 4
A
120 123anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
559 560first strand
Strand 2
B
582 585anti-parallel
Strand 3
B
591 593anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
569 570first strand
Strand 2
B
575 576anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 79first strand
Strand 2
C
86 92anti-parallel
Strand 3
C
103 109anti-parallel
Strand 4
C
120 123anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
558 560first strand
Strand 2
D
582 585anti-parallel
Strand 3
D
591 593anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
569 570first strand
Strand 2
D
575 576anti-parallel
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