Analysis of interatomic Contacts of Structural Units in PDB entry:
6WA8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WA8 entry

There are 4 chains in PDB entry 6WA8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 417
B	MET 1	PHE 412
C	MET 1	LYS 417
D	MET 1	ALA 27

There are105 helices in PDB entry 6WA8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	9	Right-handed alpha
Helix 2	AA2	A	10	17	Right-handed alpha
Helix 3	AA3	A	23	28	Right-handed alpha
Helix 4	AA4	A	29	32	Right-handed 310
Helix 5	AA5	A	34	46	Right-handed alpha
Helix 6	AA6	A	82	89	Right-handed alpha
Helix 7	AA7	A	153	166	Right-handed alpha
Helix 8	AA8	A	183	199	Right-handed alpha
Helix 9	AA9	A	212	221	Right-handed alpha
Helix 10	AB1	A	235	255	Right-handed alpha
Helix 11	AB2	A	266	278	Right-handed alpha
Helix 12	AB3	A	294	304	Right-handed alpha
Helix 13	AB4	A	325	335	Right-handed alpha
Helix 14	AB5	A	346	351	Right-handed alpha
Helix 15	AB6	A	359	363	Right-handed 310
Helix 16	AB7	A	367	372	Right-handed 310
Helix 17	AB8	A	373	388	Right-handed alpha
Helix 18	AB9	A	393	404	Right-handed alpha
Helix 19	AC1	B	2	9	Right-handed alpha
Helix 20	AC2	B	10	20	Right-handed alpha
Helix 21	AC3	B	30	44	Right-handed alpha
Helix 22	AC4	B	82	89	Right-handed alpha
Helix 23	AC5	B	131	135	Right-handed 310
Helix 24	AC6	B	153	166	Right-handed alpha
Helix 25	AC7	B	184	199	Right-handed alpha
Helix 26	AC8	B	212	221	Right-handed alpha
Helix 27	AC9	B	235	255	Right-handed alpha
Helix 28	AD1	B	266	278	Right-handed alpha
Helix 29	AD2	B	294	304	Right-handed alpha
Helix 30	AD3	B	325	335	Right-handed alpha
Helix 31	AD4	B	346	352	Right-handed alpha
Helix 32	AD5	B	359	363	Right-handed 310
Helix 33	AD6	B	367	371	Right-handed 310
Helix 34	AD7	B	373	388	Right-handed alpha
Helix 35	AD8	B	391	404	Right-handed alpha
Helix 36	AD9	B	408	412	Right-handed 310
Helix 37	AE1	C	2	9	Right-handed alpha
Helix 38	AE2	C	10	20	Right-handed alpha
Helix 39	AE3	C	30	44	Right-handed alpha
Helix 40	AE4	C	82	89	Right-handed alpha
Helix 41	AE5	C	131	135	Right-handed 310
Helix 42	AE6	C	153	166	Right-handed alpha
Helix 43	AE7	C	183	199	Right-handed alpha
Helix 44	AE8	C	212	221	Right-handed alpha
Helix 45	AE9	C	235	256	Right-handed alpha
Helix 46	AF1	C	266	278	Right-handed alpha
Helix 47	AF2	C	291	293	Right-handed 310
Helix 48	AF3	C	294	304	Right-handed alpha
Helix 49	AF4	C	325	335	Right-handed alpha
Helix 50	AF5	C	346	352	Right-handed alpha
Helix 51	AF6	C	359	363	Right-handed 310
Helix 52	AF7	C	373	388	Right-handed alpha
Helix 53	AF8	C	392	404	Right-handed alpha
Helix 54	AF9	C	409	414	Right-handed alpha
Helix 55	AG1	D	2	8	Right-handed alpha
Helix 56	AG2	D	10	20	Right-handed alpha
Helix 57	AG3	D	30	44	Right-handed alpha
Helix 58	AG4	D	82	89	Right-handed alpha
Helix 59	AG5	D	131	135	Right-handed 310
Helix 60	AG6	D	153	166	Right-handed alpha
Helix 61	AG7	D	183	199	Right-handed alpha
Helix 62	AG8	D	212	221	Right-handed alpha
Helix 63	AG9	D	235	256	Right-handed alpha
Helix 64	AH1	D	266	278	Right-handed alpha
Helix 65	AH2	D	294	304	Right-handed alpha
Helix 66	AH3	D	325	335	Right-handed alpha
Helix 67	AH4	D	346	352	Right-handed alpha
Helix 68	AH5	D	359	363	Right-handed 310
Helix 69	AH6	D	367	371	Right-handed 310
Helix 70	AH7	D	373	388	Right-handed alpha
Helix 71	AH8	D	392	404	Right-handed alpha
Helix 72	AH9	E	2	8	Right-handed alpha
Helix 73	AI1	E	10	20	Right-handed alpha
Helix 74	AI2	E	30	44	Right-handed alpha
Helix 75	AI3	E	82	89	Right-handed alpha
Helix 76	AI4	E	131	135	Right-handed 310
Helix 77	AI5	E	153	166	Right-handed alpha
Helix 78	AI6	E	183	199	Right-handed alpha
Helix 79	AI7	E	212	221	Right-handed alpha
Helix 80	AI8	E	235	255	Right-handed alpha
Helix 81	AI9	E	266	278	Right-handed alpha
Helix 82	AJ1	E	294	304	Right-handed alpha
Helix 83	AJ2	E	325	335	Right-handed alpha
Helix 84	AJ3	E	346	352	Right-handed alpha
Helix 85	AJ4	E	359	363	Right-handed 310
Helix 86	AJ5	E	373	388	Right-handed alpha
Helix 87	AJ6	E	393	404	Right-handed alpha
Helix 88	AJ7	F	2	9	Right-handed alpha
Helix 89	AJ8	F	10	20	Right-handed alpha
Helix 90	AJ9	F	30	44	Right-handed alpha
Helix 91	AK1	F	82	89	Right-handed alpha
Helix 92	AK2	F	131	135	Right-handed 310
Helix 93	AK3	F	153	166	Right-handed alpha
Helix 94	AK4	F	183	199	Right-handed alpha
Helix 95	AK5	F	212	221	Right-handed alpha
Helix 96	AK6	F	235	256	Right-handed alpha
Helix 97	AK7	F	266	278	Right-handed alpha
Helix 98	AK8	F	291	293	Right-handed 310
Helix 99	AK9	F	294	303	Right-handed alpha
Helix 100	AL1	F	325	335	Right-handed alpha
Helix 101	AL2	F	346	352	Right-handed alpha
Helix 102	AL3	F	359	363	Right-handed 310
Helix 103	AL4	F	373	388	Right-handed alpha
Helix 104	AL5	F	393	404	Right-handed alpha
Helix 105	AL6	F	412	417	Right-handed alpha

There are 25 sheets in PDB entry 6WA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	112	first strand
Strand 2	A	79	81	parallel
Strand 3	A	63	66	anti-parallel
Strand 4	A	50	57	anti-parallel
Strand 5	A	96	100	anti-parallel
Strand 6	A	118	119	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	231	first strand
Strand 2	A	203	211	parallel
Strand 3	A	259	265	parallel
Strand 4	A	312	320	parallel
Strand 5	A	305	306	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	231	first strand
Strand 2	A	203	211	parallel
Strand 3	A	259	265	parallel
Strand 4	A	312	320	parallel
Strand 5	A	173	178	parallel
Strand 6	A	341	344	parallel
Strand 7	A	364	365	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	286	first strand
Strand 2	A	289	290	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	96	102	anti-parallel
Strand 3	B	111	113	anti-parallel
Strand 4	B	79	80	parallel
Strand 5	B	64	66	anti-parallel
Strand 6	B	49	56	anti-parallel
Strand 7	B	96	102	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand
Strand 2	B	203	211	parallel
Strand 3	B	259	265	parallel
Strand 4	B	312	320	parallel
Strand 5	B	305	306	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand
Strand 2	B	203	211	parallel
Strand 3	B	259	265	parallel
Strand 4	B	312	320	parallel
Strand 5	B	173	178	parallel
Strand 6	B	341	344	parallel
Strand 7	B	364	365	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	286	first strand
Strand 2	B	289	290	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	96	102	anti-parallel
Strand 3	C	111	113	anti-parallel
Strand 4	C	79	80	parallel
Strand 5	C	64	66	anti-parallel
Strand 6	C	49	56	anti-parallel
Strand 7	C	96	102	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	168	169	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	231	first strand
Strand 2	C	203	211	parallel
Strand 3	C	260	265	parallel
Strand 4	C	312	320	parallel
Strand 5	C	305	306	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	231	first strand
Strand 2	C	203	211	parallel
Strand 3	C	260	265	parallel
Strand 4	C	312	320	parallel
Strand 5	C	173	178	parallel
Strand 6	C	341	344	parallel
Strand 7	C	364	365	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	96	102	anti-parallel
Strand 3	D	111	113	anti-parallel
Strand 4	D	79	81	parallel
Strand 5	D	63	66	anti-parallel
Strand 6	D	50	57	anti-parallel
Strand 7	D	96	102	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	168	169	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	231	first strand
Strand 2	D	203	211	parallel
Strand 3	D	259	265	parallel
Strand 4	D	312	320	parallel
Strand 5	D	305	306	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	231	first strand
Strand 2	D	203	211	parallel
Strand 3	D	259	265	parallel
Strand 4	D	312	320	parallel
Strand 5	D	173	178	parallel
Strand 6	D	341	344	parallel
Strand 7	D	364	365	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	286	first strand
Strand 2	D	289	290	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	E	96	102	anti-parallel
Strand 3	E	111	113	anti-parallel
Strand 4	E	79	80	parallel
Strand 5	E	64	66	anti-parallel
Strand 6	E	49	56	anti-parallel
Strand 7	E	96	102	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	145	first strand
Strand 2	E	168	169	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	231	first strand
Strand 2	E	203	211	parallel
Strand 3	E	259	265	parallel
Strand 4	E	312	320	parallel
Strand 5	E	305	306	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	231	first strand
Strand 2	E	203	211	parallel
Strand 3	E	259	265	parallel
Strand 4	E	312	320	parallel
Strand 5	E	173	178	parallel
Strand 6	E	341	344	parallel
Strand 7	E	364	365	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	285	286	first strand
Strand 2	E	289	290	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	F	96	102	anti-parallel
Strand 3	F	111	113	anti-parallel
Strand 4	F	79	81	parallel
Strand 5	F	63	66	anti-parallel
Strand 6	F	50	57	anti-parallel
Strand 7	F	96	102	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	231	first strand
Strand 2	F	203	211	parallel
Strand 3	F	260	265	parallel
Strand 4	F	312	320	parallel
Strand 5	F	305	306	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	231	first strand
Strand 2	F	203	211	parallel
Strand 3	F	260	265	parallel
Strand 4	F	312	320	parallel
Strand 5	F	173	178	parallel
Strand 6	F	341	344	parallel
Strand 7	F	364	365	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WA8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WA8