Analysis of interatomic Contacts of Structural Units in PDB entry:
6WAA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WAA entry

There are 2 chains in PDB entry 6WAA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 400	ARG 1119
B	THR 1121	PRO 1479

There are109 helices in PDB entry 6WAA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	420	431	Right-handed alpha
Helix 2	AA2	B	452	459	Right-handed alpha
Helix 3	AA3	B	459	470	Right-handed alpha
Helix 4	AA4	B	477	481	Right-handed 310
Helix 5	AA5	B	493	510	Right-handed alpha
Helix 6	AA6	B	511	518	Right-handed alpha
Helix 7	AA7	B	541	553	Right-handed alpha
Helix 8	AA8	B	566	570	Right-handed 310
Helix 9	AA9	B	571	579	Right-handed alpha
Helix 10	AB1	B	596	609	Right-handed alpha
Helix 11	AB2	B	612	624	Right-handed alpha
Helix 12	AB3	B	1010	1029	Right-handed alpha
Helix 13	AB4	B	1039	1052	Right-handed alpha
Helix 14	AB5	B	1063	1074	Right-handed alpha
Helix 15	AB6	B	1078	1091	Right-handed alpha
Helix 16	AB7	B	1129	1134	Right-handed alpha
Helix 17	AB8	B	1162	1167	Right-handed alpha
Helix 18	AB9	B	1184	1198	Right-handed alpha
Helix 19	AC1	B	1202	1210	Right-handed alpha
Helix 20	AC2	B	1224	1235	Right-handed alpha
Helix 21	AC3	B	1262	1277	Right-handed alpha
Helix 22	AC4	B	1307	1319	Right-handed alpha
Helix 23	AC5	B	1342	1385	Right-handed alpha
Helix 24	AC6	B	1385	1396	Right-handed alpha
Helix 25	AC7	B	1398	1408	Right-handed alpha
Helix 26	AC8	B	1410	1419	Right-handed alpha
Helix 27	AC9	B	1421	1425	Right-handed 310
Helix 28	AD1	B	1426	1453	Right-handed alpha
Helix 29	AD2	B	1453	1473	Right-handed alpha
Helix 30	AD3	D	420	431	Right-handed alpha
Helix 31	AD4	D	452	459	Right-handed alpha
Helix 32	AD5	D	459	470	Right-handed alpha
Helix 33	AD6	D	493	510	Right-handed alpha
Helix 34	AD7	D	511	518	Right-handed alpha
Helix 35	AD8	D	571	579	Right-handed alpha
Helix 36	AD9	D	595	609	Right-handed alpha
Helix 37	AE1	D	612	624	Right-handed alpha
Helix 38	AE2	D	1009	1029	Right-handed alpha
Helix 39	AE3	D	1039	1052	Right-handed alpha
Helix 40	AE4	D	1063	1074	Right-handed alpha
Helix 41	AE5	D	1078	1091	Right-handed alpha
Helix 42	AE6	D	1129	1134	Right-handed alpha
Helix 43	AE7	D	1162	1167	Right-handed alpha
Helix 44	AE8	D	1184	1198	Right-handed alpha
Helix 45	AE9	D	1202	1210	Right-handed alpha
Helix 46	AF1	D	1224	1235	Right-handed alpha
Helix 47	AF2	D	1262	1277	Right-handed alpha
Helix 48	AF3	D	1308	1319	Right-handed alpha
Helix 49	AF4	D	1342	1385	Right-handed alpha
Helix 50	AF5	D	1385	1396	Right-handed alpha
Helix 51	AF6	D	1398	1408	Right-handed alpha
Helix 52	AF7	D	1410	1419	Right-handed alpha
Helix 53	AF8	D	1421	1425	Right-handed 310
Helix 54	AF9	D	1426	1453	Right-handed alpha
Helix 55	AG1	D	1453	1473	Right-handed alpha
Helix 56	AG2	F	420	431	Right-handed alpha
Helix 57	AG3	F	452	459	Right-handed alpha
Helix 58	AG4	F	459	470	Right-handed alpha
Helix 59	AG5	F	493	510	Right-handed alpha
Helix 60	AG6	F	511	518	Right-handed alpha
Helix 61	AG7	F	541	553	Right-handed alpha
Helix 62	AG8	F	566	570	Right-handed 310
Helix 63	AG9	F	571	579	Right-handed alpha
Helix 64	AH1	F	596	609	Right-handed alpha
Helix 65	AH2	F	612	624	Right-handed alpha
Helix 66	AH3	F	1010	1029	Right-handed alpha
Helix 67	AH4	F	1039	1052	Right-handed alpha
Helix 68	AH5	F	1063	1074	Right-handed alpha
Helix 69	AH6	F	1078	1091	Right-handed alpha
Helix 70	AH7	F	1129	1134	Right-handed alpha
Helix 71	AH8	F	1162	1167	Right-handed alpha
Helix 72	AH9	F	1184	1198	Right-handed alpha
Helix 73	AI1	F	1202	1210	Right-handed alpha
Helix 74	AI2	F	1224	1235	Right-handed alpha
Helix 75	AI3	F	1262	1277	Right-handed alpha
Helix 76	AI4	F	1307	1319	Right-handed alpha
Helix 77	AI5	F	1342	1385	Right-handed alpha
Helix 78	AI6	F	1385	1396	Right-handed alpha
Helix 79	AI7	F	1398	1408	Right-handed alpha
Helix 80	AI8	F	1410	1419	Right-handed alpha
Helix 81	AI9	F	1421	1425	Right-handed 310
Helix 82	AJ1	F	1426	1453	Right-handed alpha
Helix 83	AJ2	F	1453	1473	Right-handed alpha
Helix 84	AJ3	H	420	431	Right-handed alpha
Helix 85	AJ4	H	452	459	Right-handed alpha
Helix 86	AJ5	H	459	470	Right-handed alpha
Helix 87	AJ6	H	493	510	Right-handed alpha
Helix 88	AJ7	H	511	518	Right-handed alpha
Helix 89	AJ8	H	571	579	Right-handed alpha
Helix 90	AJ9	H	596	609	Right-handed alpha
Helix 91	AK1	H	612	624	Right-handed alpha
Helix 92	AK2	H	1010	1029	Right-handed alpha
Helix 93	AK3	H	1039	1052	Right-handed alpha
Helix 94	AK4	H	1063	1074	Right-handed alpha
Helix 95	AK5	H	1078	1091	Right-handed alpha
Helix 96	AK6	H	1129	1134	Right-handed alpha
Helix 97	AK7	H	1162	1167	Right-handed alpha
Helix 98	AK8	H	1184	1198	Right-handed alpha
Helix 99	AK9	H	1202	1210	Right-handed alpha
Helix 100	AL1	H	1224	1235	Right-handed alpha
Helix 101	AL2	H	1262	1277	Right-handed alpha
Helix 102	AL3	H	1309	1319	Right-handed alpha
Helix 103	AL4	H	1342	1385	Right-handed alpha
Helix 104	AL5	H	1385	1396	Right-handed alpha
Helix 105	AL6	H	1398	1408	Right-handed alpha
Helix 106	AL7	H	1410	1419	Right-handed alpha
Helix 107	AL8	H	1421	1425	Right-handed 310
Helix 108	AL9	H	1426	1453	Right-handed alpha
Helix 109	AM1	H	1453	1473	Right-handed alpha

There are 28 sheets in PDB entry 6WAA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	440	first strand
Strand 2	B	414	418	parallel
Strand 3	B	485	489	parallel
Strand 4	B	520	523	parallel
Strand 5	B	587	591	anti-parallel
Strand 6	B	1007	1009	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	539	first strand
Strand 2	B	528	532	anti-parallel
Strand 3	B	560	563	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1061	1062	first strand
Strand 2	B	1122	1125	anti-parallel
Strand 3	B	1100	1103	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1143	1145	first strand
Strand 2	B	1152	1154	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1170	1172	first strand
Strand 2	B	1177	1179	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1220	1221	first strand
Strand 2	B	1236	1242	anti-parallel
Strand 3	B	1322	1328	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1244	1248	first strand
Strand 2	B	1251	1256	anti-parallel
Strand 3	B	1297	1301	anti-parallel
Strand 4	B	1282	1287	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1330	1332	first strand
Strand 2	B	1338	1340	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	436	440	first strand
Strand 2	D	414	418	parallel
Strand 3	D	485	489	parallel
Strand 4	D	520	523	parallel
Strand 5	D	587	589	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1061	1062	first strand
Strand 2	D	1122	1125	anti-parallel
Strand 3	D	1100	1103	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1143	1145	first strand
Strand 2	D	1152	1154	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1170	1172	first strand
Strand 2	D	1177	1179	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1220	1221	first strand
Strand 2	D	1236	1242	anti-parallel
Strand 3	D	1322	1328	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1330	1332	first strand
Strand 2	D	1338	1340	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	436	440	first strand
Strand 2	F	414	418	parallel
Strand 3	F	485	489	parallel
Strand 4	F	520	523	parallel
Strand 5	F	587	591	anti-parallel
Strand 6	F	1007	1009	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	535	539	first strand
Strand 2	F	528	532	anti-parallel
Strand 3	F	560	563	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1061	1062	first strand
Strand 2	F	1122	1125	anti-parallel
Strand 3	F	1100	1103	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1143	1145	first strand
Strand 2	F	1152	1154	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1170	1172	first strand
Strand 2	F	1177	1179	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1220	1221	first strand
Strand 2	F	1236	1242	anti-parallel
Strand 3	F	1322	1328	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1244	1248	first strand
Strand 2	F	1251	1256	anti-parallel
Strand 3	F	1297	1301	anti-parallel
Strand 4	F	1282	1287	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1330	1332	first strand
Strand 2	F	1338	1340	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	436	441	first strand
Strand 2	H	414	419	parallel
Strand 3	H	485	489	parallel
Strand 4	H	520	523	parallel
Strand 5	H	587	591	anti-parallel
Strand 6	H	1007	1009	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1061	1062	first strand
Strand 2	H	1122	1125	anti-parallel
Strand 3	H	1100	1103	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1143	1145	first strand
Strand 2	H	1152	1154	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1170	1172	first strand
Strand 2	H	1177	1179	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1220	1221	first strand
Strand 2	H	1236	1242	anti-parallel
Strand 3	H	1322	1328	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1330	1332	first strand
Strand 2	H	1338	1340	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WAA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WAA