Analysis of interatomic Contacts of Structural Units in PDB entry:
6WAO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WAO entry

There are 2 chains in PDB entry 6WAO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4VAL 434
B
 GLU 4VAL 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6WAO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 35Right-handed alpha
Helix 2
AA2
A
52 67Right-handed alpha
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
106 112Right-handed alpha
Helix 5
AA5
A
119 125Right-handed 310
Helix 6
AA6
A
131 137Right-handed 310
Helix 7
AA7
A
164 182Right-handed alpha
Helix 8
AA8
A
234 249Right-handed alpha
Helix 9
AA9
A
254 270Right-handed alpha
Helix 10
AB1
A
313 319Right-handed alpha
Helix 11
AB2
A
320 335Right-handed alpha
Helix 12
AB3
A
336 350Right-handed alpha
Helix 13
AB4
A
371 375Right-handed 310
Helix 14
AB5
A
414 423Right-handed alpha
Helix 15
AB6
A
424 431Right-handed alpha
Helix 16
AB7
B
30 36Right-handed alpha
Helix 17
AB8
B
52 67Right-handed alpha
Helix 18
AB9
B
68 72Right-handed 310
Helix 19
AC1
B
106 112Right-handed alpha
Helix 20
AC2
B
119 125Right-handed 310
Helix 21
AC3
B
131 137Right-handed 310
Helix 22
AC4
B
164 181Right-handed alpha
Helix 23
AC5
B
234 249Right-handed alpha
Helix 24
AC6
B
254 270Right-handed alpha
Helix 25
AC7
B
313 319Right-handed alpha
Helix 26
AC8
B
320 334Right-handed alpha
Helix 27
AC9
B
336 350Right-handed alpha
Helix 28
AD1
B
371 375Right-handed 310
Helix 29
AD2
B
414 423Right-handed alpha
Helix 30
AD3
B
424 431Right-handed alpha
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There are 8 sheets in PDB entry 6WAO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 13first strand
Strand 2
A
95 102anti-parallel
Strand 3
A
141 148parallel
Strand 4
A
152 158anti-parallel
Strand 5
A
42 48anti-parallel
Strand 6
A
384 387anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
84 89anti-parallel
Strand 3
A
73 78anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
227 233anti-parallel
Strand 3
A
407 413anti-parallel
Strand 4
A
395 400anti-parallel
Strand 5
A
362 367parallel
Strand 6
A
278 286parallel
Strand 7
A
304 312anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
227 233anti-parallel
Strand 3
A
432 433anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 13first strand
Strand 2
B
95 102anti-parallel
Strand 3
B
141 148parallel
Strand 4
B
152 158anti-parallel
Strand 5
B
42 48anti-parallel
Strand 6
B
384 387anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
84 89anti-parallel
Strand 3
B
73 78anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
227 233anti-parallel
Strand 3
B
407 413anti-parallel
Strand 4
B
395 400anti-parallel
Strand 5
B
362 367parallel
Strand 6
B
278 286parallel
Strand 7
B
304 312anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
227 233anti-parallel
Strand 3
B
432 434anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il