Analysis of interatomic Contacts of Structural Units in PDB entry:
6WAQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WAQ entry

There are 4 chains in PDB entry 6WAQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	SER 115
D	THR 320	GLY 503
C	GLN 1	SER 113
B	ASN 321	GLN 510

There are 24 helices in PDB entry 6WAQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	61	64	Right-handed 310
Helix 3	AA3	A	83	87	Right-handed 310
Helix 4	AA4	A	100	100	Right-handed 310
Helix 5	AA5	D	325	330	Right-handed alpha
Helix 6	AA6	D	336	340	Right-handed 310
Helix 7	AA7	D	352	357	Right-handed alpha
Helix 8	AA8	D	370	378	Right-handed 310
Helix 9	AA9	D	392	397	Right-handed 310
Helix 10	AB1	D	403	409	Right-handed alpha
Helix 11	AB2	D	425	430	Right-handed alpha
Helix 12	AB3	D	488	491	Right-handed 310
Helix 13	AB4	C	28	32	Right-handed 310
Helix 14	AB5	C	61	64	Right-handed 310
Helix 15	AB6	C	83	87	Right-handed 310
Helix 16	AB7	C	100	100	Right-handed 310
Helix 17	AB8	B	325	330	Right-handed alpha
Helix 18	AB9	B	336	340	Right-handed 310
Helix 19	AC1	B	352	357	Right-handed alpha
Helix 20	AC2	B	373	377	Right-handed 310
Helix 21	AC3	B	392	397	Right-handed 310
Helix 22	AC4	B	403	409	Right-handed alpha
Helix 23	AC5	B	425	430	Right-handed alpha
Helix 24	AC6	B	488	491	Right-handed 310

There are 10 sheets in PDB entry 6WAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	107	112	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	107	112	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	100	103	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	B	363	367	anti-parallel
Strand 3	B	418	424	anti-parallel
Strand 4	B	493	501	anti-parallel
Strand 5	B	382	390	anti-parallel
Strand 6	B	341	345	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	345	first strand
Strand 2	D	382	390	anti-parallel
Strand 3	D	493	501	anti-parallel
Strand 4	D	418	424	anti-parallel
Strand 5	D	363	367	anti-parallel
Strand 6	C	99	100	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	439	441	first strand
Strand 2	D	478	480	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	107	112	parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	107	112	parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	100	103	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	441	first strand
Strand 2	B	478	480	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WAQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WAQ