Analysis of interatomic Contacts of Structural Units in PDB entry:
6WAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WAR entry

There are 8 chains in PDB entry 6WAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 378	LEU 588
B	VAL 2	SER 115
C	ALA 378	LEU 588
D	VAL 2	VAL 118
E	ALA 378	LEU 588
F	VAL 2	GLY 114
G	ALA 378	LEU 588
H	VAL 2	PRO 100

There are 68 helices in PDB entry 6WAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	385	390	Right-handed alpha
Helix 2	AA2	A	395	399	Right-handed 310
Helix 3	AA3	A	410	416	Right-handed alpha
Helix 4	AA4	A	429	434	Right-handed alpha
Helix 5	AA5	A	449	456	Right-handed 310
Helix 6	AA6	A	463	468	Right-handed alpha
Helix 7	AA7	A	524	529	Right-handed 310
Helix 8	AA8	B	83	87	Right-handed 310
Helix 9	AA9	C	385	389	Right-handed 310
Helix 10	AB1	C	395	399	Right-handed 310
Helix 11	AB2	C	410	416	Right-handed alpha
Helix 12	AB3	C	429	434	Right-handed alpha
Helix 13	AB4	C	449	456	Right-handed 310
Helix 14	AB5	C	462	468	Right-handed alpha
Helix 15	AB6	C	524	529	Right-handed 310
Helix 16	AB7	D	73	75	Right-handed 310
Helix 17	AB8	D	83	87	Right-handed 310
Helix 18	AB9	E	385	390	Right-handed alpha
Helix 19	AC1	E	395	399	Right-handed 310
Helix 20	AC2	E	410	416	Right-handed alpha
Helix 21	AC3	E	429	434	Right-handed alpha
Helix 22	AC4	E	449	456	Right-handed 310
Helix 23	AC5	E	462	468	Right-handed alpha
Helix 24	AC6	E	524	529	Right-handed 310
Helix 25	AC7	F	73	75	Right-handed 310
Helix 26	AC8	F	83	87	Right-handed 310
Helix 27	AC9	G	385	390	Right-handed alpha
Helix 28	AD1	G	395	399	Right-handed 310
Helix 29	AD2	G	410	416	Right-handed alpha
Helix 30	AD3	G	429	434	Right-handed alpha
Helix 31	AD4	G	449	456	Right-handed 310
Helix 32	AD5	G	462	468	Right-handed alpha
Helix 33	AD6	G	524	529	Right-handed 310
Helix 34	AD7	H	83	87	Right-handed 310
Helix 35	AD8	I	385	390	Right-handed alpha
Helix 36	AD9	I	395	399	Right-handed 310
Helix 37	AE1	I	410	416	Right-handed alpha
Helix 38	AE2	I	429	434	Right-handed alpha
Helix 39	AE3	I	449	456	Right-handed 310
Helix 40	AE4	I	462	468	Right-handed alpha
Helix 41	AE5	I	524	529	Right-handed 310
Helix 42	AE6	J	73	75	Right-handed 310
Helix 43	AE7	J	83	87	Right-handed 310
Helix 44	AE8	K	385	389	Right-handed 310
Helix 45	AE9	K	395	399	Right-handed 310
Helix 46	AF1	K	410	416	Right-handed alpha
Helix 47	AF2	K	429	434	Right-handed alpha
Helix 48	AF3	K	449	456	Right-handed 310
Helix 49	AF4	K	463	468	Right-handed alpha
Helix 50	AF5	K	524	529	Right-handed 310
Helix 51	AF6	L	73	75	Right-handed 310
Helix 52	AF7	L	83	87	Right-handed 310
Helix 53	AF8	M	385	389	Right-handed 310
Helix 54	AF9	M	395	399	Right-handed 310
Helix 55	AG1	M	410	416	Right-handed alpha
Helix 56	AG2	M	429	434	Right-handed alpha
Helix 57	AG3	M	449	456	Right-handed 310
Helix 58	AG4	M	462	468	Right-handed alpha
Helix 59	AG5	M	524	529	Right-handed 310
Helix 60	AG6	N	83	87	Right-handed 310
Helix 61	AG7	O	385	390	Right-handed alpha
Helix 62	AG8	O	395	399	Right-handed 310
Helix 63	AG9	O	410	416	Right-handed alpha
Helix 64	AH1	O	429	434	Right-handed alpha
Helix 65	AH2	O	449	456	Right-handed 310
Helix 66	AH3	O	462	468	Right-handed alpha
Helix 67	AH4	O	524	529	Right-handed 310
Helix 68	AH5	P	83	87	Right-handed 310

There are 47 sheets in PDB entry 6WAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	404	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	568	576	anti-parallel
Strand 4	A	477	483	anti-parallel
Strand 5	A	419	426	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	409	first strand
Strand 2	A	584	586	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	553	562	anti-parallel
Strand 4	A	540	544	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	18	23	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	107	112	parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	31	39	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	57	59	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	107	112	parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	102	103	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	404	first strand
Strand 2	C	440	447	anti-parallel
Strand 3	C	568	576	anti-parallel
Strand 4	C	477	483	anti-parallel
Strand 5	C	419	426	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	409	first strand
Strand 2	C	584	586	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	513	515	first strand
Strand 2	C	496	506	anti-parallel
Strand 3	C	553	562	anti-parallel
Strand 4	C	540	544	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	107	112	parallel
Strand 3	D	88	96	anti-parallel
Strand 4	D	31	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	107	112	parallel
Strand 3	D	88	96	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	400	404	first strand
Strand 2	E	440	447	anti-parallel
Strand 3	E	568	576	anti-parallel
Strand 4	E	477	483	anti-parallel
Strand 5	E	419	426	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	407	409	first strand
Strand 2	E	584	586	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	513	515	first strand
Strand 2	E	496	506	anti-parallel
Strand 3	E	553	562	anti-parallel
Strand 4	E	540	544	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	68	72	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	107	112	parallel
Strand 3	F	88	96	anti-parallel
Strand 4	F	31	39	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	107	112	parallel
Strand 3	F	88	96	anti-parallel
Strand 4	F	102	103	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	400	404	first strand
Strand 2	G	440	447	anti-parallel
Strand 3	G	568	576	anti-parallel
Strand 4	G	477	483	anti-parallel
Strand 5	G	419	426	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	513	515	first strand
Strand 2	G	496	506	anti-parallel
Strand 3	G	553	562	anti-parallel
Strand 4	G	540	544	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	107	112	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	31	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	107	112	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	400	404	first strand
Strand 2	I	440	447	anti-parallel
Strand 3	I	568	576	anti-parallel
Strand 4	I	477	483	anti-parallel
Strand 5	I	419	426	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	408	409	first strand
Strand 2	I	585	586	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	513	515	first strand
Strand 2	I	496	506	anti-parallel
Strand 3	I	553	562	anti-parallel
Strand 4	I	540	544	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	107	112	parallel
Strand 3	J	88	96	anti-parallel
Strand 4	J	31	39	anti-parallel
Strand 5	J	46	52	anti-parallel
Strand 6	J	57	59	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	107	112	parallel
Strand 3	J	88	96	anti-parallel
Strand 4	J	102	103	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	400	404	first strand
Strand 2	K	440	447	anti-parallel
Strand 3	K	568	576	anti-parallel
Strand 4	K	477	483	anti-parallel
Strand 5	K	419	426	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	408	409	first strand
Strand 2	K	585	586	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	513	515	first strand
Strand 2	K	496	506	anti-parallel
Strand 3	K	553	562	anti-parallel
Strand 4	K	540	544	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	7	first strand
Strand 2	L	18	25	anti-parallel
Strand 3	L	77	82	anti-parallel
Strand 4	L	68	72	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	107	112	parallel
Strand 3	L	88	96	anti-parallel
Strand 4	L	31	39	anti-parallel
Strand 5	L	46	52	anti-parallel
Strand 6	L	58	59	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	107	112	parallel
Strand 3	L	88	96	anti-parallel
Strand 4	L	102	103	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	400	404	first strand
Strand 2	M	440	447	anti-parallel
Strand 3	M	568	576	anti-parallel
Strand 4	M	477	483	anti-parallel
Strand 5	M	419	426	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	407	409	first strand
Strand 2	M	584	586	parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	513	515	first strand
Strand 2	M	496	506	anti-parallel
Strand 3	M	553	562	anti-parallel
Strand 4	M	540	544	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	18	24	anti-parallel
Strand 3	N	77	82	anti-parallel
Strand 4	N	67	72	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	107	112	parallel
Strand 3	N	88	96	anti-parallel
Strand 4	N	31	40	anti-parallel
Strand 5	N	43	52	anti-parallel
Strand 6	N	58	59	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	107	112	parallel
Strand 3	N	88	96	anti-parallel
Strand 4	N	102	103	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	400	404	first strand
Strand 2	O	440	447	anti-parallel
Strand 3	O	568	576	anti-parallel
Strand 4	O	477	483	anti-parallel
Strand 5	O	419	426	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	407	409	first strand
Strand 2	O	584	586	parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	513	515	first strand
Strand 2	O	497	506	anti-parallel
Strand 3	O	553	561	anti-parallel
Strand 4	O	540	544	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	7	first strand
Strand 2	P	17	25	anti-parallel
Strand 3	P	77	82	anti-parallel
Strand 4	P	68	72	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	11	13	first strand
Strand 2	P	107	112	parallel
Strand 3	P	88	96	anti-parallel
Strand 4	P	31	39	anti-parallel
Strand 5	P	46	52	anti-parallel
Strand 6	P	58	59	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	11	13	first strand
Strand 2	P	107	112	parallel
Strand 3	P	88	96	anti-parallel
Strand 4	P	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WAR