Analysis of interatomic Contacts of Structural Units in PDB entry:
6WAZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WAZ entry

There are 4 chains in PDB entry 6WAZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	LYS 558
B	PRO 4	GLN 428
C	G 181	A 203
D	G 1	C 77

There are 29 helices in PDB entry 6WAZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	44	Right-handed alpha
Helix 2	AA2	A	96	100	Right-handed 310
Helix 3	AA3	A	114	118	Right-handed 310
Helix 4	AA4	A	124	128	Right-handed 310
Helix 5	AA5	A	155	175	Right-handed alpha
Helix 6	AA6	A	194	211	Right-handed alpha
Helix 7	AA7	A	253	269	Right-handed alpha
Helix 8	AA8	A	280	284	Right-handed 310
Helix 9	AA9	A	296	312	Right-handed alpha
Helix 10	AB1	A	363	383	Right-handed alpha
Helix 11	AB2	A	394	404	Right-handed alpha
Helix 12	AB3	A	473	489	Right-handed alpha
Helix 13	AB4	A	499	507	Right-handed alpha
Helix 14	AB5	A	515	526	Right-handed alpha
Helix 15	AB6	A	543	554	Right-handed alpha
Helix 16	AB7	B	27	44	Right-handed alpha
Helix 17	AB8	B	77	90	Right-handed alpha
Helix 18	AB9	B	99	103	Right-handed 310
Helix 19	AC1	B	113	118	Right-handed 310
Helix 20	AC2	B	124	127	Right-handed 310
Helix 21	AC3	B	134	138	Right-handed 310
Helix 22	AC4	B	155	175	Right-handed alpha
Helix 23	AC5	B	194	211	Right-handed alpha
Helix 24	AC6	B	253	268	Right-handed alpha
Helix 25	AC7	B	276	282	Right-handed alpha
Helix 26	AC8	B	296	311	Right-handed alpha
Helix 27	AC9	B	364	384	Right-handed alpha
Helix 28	AD1	B	394	406	Right-handed alpha
Helix 29	AD2	B	422	427	Right-handed 310

There are 11 sheets in PDB entry 6WAZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	142	146	anti-parallel
Strand 3	A	130	132	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	108	first strand
Strand 2	A	187	190	anti-parallel
Strand 3	A	179	182	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	239	241	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	340	344	anti-parallel
Strand 3	A	347	351	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	468	first strand
Strand 2	A	454	458	anti-parallel
Strand 3	A	439	445	anti-parallel
Strand 4	A	493	496	parallel
Strand 5	A	531	532	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	142	146	anti-parallel
Strand 3	B	129	132	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	73	75	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	180	181	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	105	107	anti-parallel
Strand 4	B	233	234	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	340	342	anti-parallel
Strand 3	B	326	328	anti-parallel
Strand 4	B	388	390	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	337	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WAZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WAZ