Analysis of interatomic Contacts of Structural Units in PDB entry:
6WB1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WB1 entry

There are 4 chains in PDB entry 6WB1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 C 134 A 203
D
 G 1 G 79
A
 PRO 4LYS 558
B
 ILE 5GLN 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 6WB1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 44Right-handed alpha
Helix 2
AA2
A
96 100Right-handed 310
Helix 3
AA3
A
113 118Right-handed 310
Helix 4
AA4
A
121 126Right-handed alpha
Helix 5
AA5
A
155 175Right-handed alpha
Helix 6
AA6
A
194 211Right-handed alpha
Helix 7
AA7
A
253 269Right-handed alpha
Helix 8
AA8
A
276 282Right-handed alpha
Helix 9
AA9
A
296 311Right-handed alpha
Helix 10
AB1
A
363 383Right-handed alpha
Helix 11
AB2
A
394 405Right-handed alpha
Helix 12
AB3
A
473 489Right-handed alpha
Helix 13
AB4
A
499 508Right-handed alpha
Helix 14
AB5
A
515 528Right-handed alpha
Helix 15
AB6
A
544 553Right-handed alpha
Helix 16
AB7
B
27 44Right-handed alpha
Helix 17
AB8
B
77 91Right-handed alpha
Helix 18
AB9
B
98 103Right-handed 310
Helix 19
AC1
B
111 116Right-handed alpha
Helix 20
AC2
B
124 129Right-handed 310
Helix 21
AC3
B
134 138Right-handed 310
Helix 22
AC4
B
154 175Right-handed alpha
Helix 23
AC5
B
194 211Right-handed alpha
Helix 24
AC6
B
253 268Right-handed alpha
Helix 25
AC7
B
276 284Right-handed alpha
Helix 26
AC8
B
296 312Right-handed alpha
Helix 27
AC9
B
364 384Right-handed alpha
Helix 28
AD1
B
394 402Right-handed alpha
Helix 29
AD2
B
422 427Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 6WB1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
145 146anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
72 74anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
179 182anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
240 241anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 351first strand
Strand 2
A
340 342anti-parallel
Strand 3
A
326 328anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
512 513anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
494 496parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
455 456anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
233 234anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 181first strand
Strand 2
B
188 189anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 350first strand
Strand 2
B
336 342anti-parallel
Strand 3
B
326 333anti-parallel
Strand 4
B
388 390parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il