Analysis of interatomic Contacts of Structural Units in PDB entry:
6WB6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WB6 entry

There are 2 chains in PDB entry 6WB6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	LEU 662
B	TYR 5	GLY 661

There are 56 helices in PDB entry 6WB6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	22	Right-handed alpha
Helix 2	AA2	A	38	48	Right-handed alpha
Helix 3	AA3	A	57	66	Right-handed alpha
Helix 4	AA4	A	104	109	Right-handed 310
Helix 5	AA5	A	124	132	Right-handed alpha
Helix 6	AA6	A	146	159	Right-handed alpha
Helix 7	AA7	A	171	182	Right-handed alpha
Helix 8	AA8	A	183	187	Right-handed 310
Helix 9	AA9	A	202	214	Right-handed alpha
Helix 10	AB1	A	223	230	Right-handed alpha
Helix 11	AB2	A	245	247	Right-handed 310
Helix 12	AB3	A	281	283	Right-handed 310
Helix 13	AB4	A	285	301	Right-handed alpha
Helix 14	AB5	A	305	311	Right-handed alpha
Helix 15	AB6	A	328	335	Right-handed alpha
Helix 16	AB7	A	337	343	Right-handed alpha
Helix 17	AB8	A	359	376	Right-handed alpha
Helix 18	AB9	A	389	399	Right-handed alpha
Helix 19	AC1	A	410	420	Right-handed alpha
Helix 20	AC2	A	450	455	Right-handed 310
Helix 21	AC3	A	470	480	Right-handed alpha
Helix 22	AC4	A	487	496	Right-handed alpha
Helix 23	AC5	A	517	522	Right-handed 310
Helix 24	AC6	A	529	536	Right-handed alpha
Helix 25	AC7	A	547	552	Right-handed 310
Helix 26	AC8	A	571	578	Right-handed 310
Helix 27	AC9	A	596	612	Right-handed alpha
Helix 28	AD1	A	643	660	Right-handed alpha
Helix 29	AD2	B	13	23	Right-handed alpha
Helix 30	AD3	B	38	48	Right-handed alpha
Helix 31	AD4	B	57	66	Right-handed alpha
Helix 32	AD5	B	104	109	Right-handed 310
Helix 33	AD6	B	124	132	Right-handed alpha
Helix 34	AD7	B	146	159	Right-handed alpha
Helix 35	AD8	B	171	182	Right-handed alpha
Helix 36	AD9	B	183	187	Right-handed 310
Helix 37	AE1	B	202	214	Right-handed alpha
Helix 38	AE2	B	223	230	Right-handed alpha
Helix 39	AE3	B	245	247	Right-handed 310
Helix 40	AE4	B	280	283	Right-handed 310
Helix 41	AE5	B	286	300	Right-handed alpha
Helix 42	AE6	B	305	311	Right-handed alpha
Helix 43	AE7	B	328	336	Right-handed alpha
Helix 44	AE8	B	337	343	Right-handed alpha
Helix 45	AE9	B	359	376	Right-handed alpha
Helix 46	AF1	B	389	399	Right-handed alpha
Helix 47	AF2	B	410	420	Right-handed alpha
Helix 48	AF3	B	450	455	Right-handed alpha
Helix 49	AF4	B	470	480	Right-handed alpha
Helix 50	AF5	B	487	496	Right-handed alpha
Helix 51	AF6	B	517	522	Right-handed alpha
Helix 52	AF7	B	529	536	Right-handed alpha
Helix 53	AF8	B	547	552	Right-handed 310
Helix 54	AF9	B	573	578	Right-handed 310
Helix 55	AG1	B	596	612	Right-handed alpha
Helix 56	AG2	B	643	660	Right-handed alpha

There are 16 sheets in PDB entry 6WB6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	10	first strand
Strand 2	A	31	36	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	275	279	anti-parallel
Strand 3	A	72	79	anti-parallel
Strand 4	A	320	327	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	112	114	parallel
Strand 3	A	218	222	parallel
Strand 4	A	90	97	anti-parallel
Strand 5	A	249	252	anti-parallel
Strand 6	A	258	260	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	112	114	parallel
Strand 3	A	218	222	parallel
Strand 4	A	90	97	anti-parallel
Strand 5	A	269	271	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	357	first strand
Strand 2	A	381	386	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	587	590	anti-parallel
Strand 3	A	422	428	anti-parallel
Strand 4	A	638	641	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	501	first strand
Strand 2	A	458	461	parallel
Strand 3	A	542	545	parallel
Strand 4	A	437	443	anti-parallel
Strand 5	A	557	560	anti-parallel
Strand 6	A	569	570	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	501	first strand
Strand 2	A	458	461	parallel
Strand 3	A	542	545	parallel
Strand 4	A	437	443	anti-parallel
Strand 5	A	581	582	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	10	first strand
Strand 2	B	32	36	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	275	278	anti-parallel
Strand 3	B	73	79	anti-parallel
Strand 4	B	320	322	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	112	114	parallel
Strand 3	B	218	222	parallel
Strand 4	B	90	97	anti-parallel
Strand 5	B	249	252	anti-parallel
Strand 6	B	258	259	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	112	114	parallel
Strand 3	B	218	222	parallel
Strand 4	B	90	97	anti-parallel
Strand 5	B	269	271	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	357	first strand
Strand 2	B	381	386	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	587	590	anti-parallel
Strand 3	B	422	428	anti-parallel
Strand 4	B	638	641	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	501	first strand
Strand 2	B	459	461	parallel
Strand 3	B	541	545	parallel
Strand 4	B	437	443	anti-parallel
Strand 5	B	557	560	anti-parallel
Strand 6	B	569	571	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	501	first strand
Strand 2	B	459	461	parallel
Strand 3	B	541	545	parallel
Strand 4	B	437	443	anti-parallel
Strand 5	B	581	582	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WB6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WB6