Analysis of interatomic Contacts of Structural Units in PDB entry:
6WB9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WB9 entry

There are 8 chains in PDB entry 6WB9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ASP 19	LYS 135
1	VAL 25	ILE 759
2	MET 1	ILE 292
3	MET 1	MET 253
4	GLN 4	ASP 190
5	SER 2	ASN 135
6	GLN 10	ILE 107
7	ARG 21	ILE 173

There are 49 helices in PDB entry 6WB9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	248	270	Right-handed alpha
Helix 2	AA2	1	291	296	Right-handed alpha
Helix 3	AA3	1	644	651	Right-handed alpha
Helix 4	AA4	1	726	758	Right-handed alpha
Helix 5	AA5	2	2	16	Right-handed alpha
Helix 6	AA6	2	17	22	Right-handed 310
Helix 7	AA7	2	23	39	Right-handed alpha
Helix 8	AA8	2	46	64	Right-handed alpha
Helix 9	AA9	2	66	81	Right-handed alpha
Helix 10	AB1	2	85	99	Right-handed alpha
Helix 11	AB2	2	101	116	Right-handed alpha
Helix 12	AB3	2	122	142	Right-handed alpha
Helix 13	AB4	2	144	158	Right-handed alpha
Helix 14	AB5	2	162	176	Right-handed alpha
Helix 15	AB6	2	178	193	Right-handed alpha
Helix 16	AB7	2	196	215	Right-handed alpha
Helix 17	AB8	2	217	236	Right-handed alpha
Helix 18	AB9	2	240	255	Right-handed alpha
Helix 19	AC1	2	262	277	Right-handed alpha
Helix 20	AC2	2	278	290	Right-handed alpha
Helix 21	AC3	3	4	34	Right-handed alpha
Helix 22	AC4	3	43	63	Right-handed alpha
Helix 23	AC5	3	64	66	Right-handed 310
Helix 24	AC6	3	67	84	Right-handed alpha
Helix 25	AC7	3	125	140	Right-handed alpha
Helix 26	AC8	3	153	155	Right-handed 310
Helix 27	AC9	3	156	161	Right-handed alpha
Helix 28	AD1	3	175	194	Right-handed alpha
Helix 29	AD2	3	221	234	Right-handed alpha
Helix 30	AD3	3	243	252	Right-handed alpha
Helix 31	AD4	4	7	12	Right-handed alpha
Helix 32	AD5	4	15	22	Right-handed alpha
Helix 33	AD6	4	62	76	Right-handed alpha
Helix 34	AD7	4	83	92	Right-handed alpha
Helix 35	AD8	4	99	116	Right-handed alpha
Helix 36	AD9	4	136	163	Right-handed alpha
Helix 37	AE1	5	3	31	Right-handed alpha
Helix 38	AE2	5	32	35	Right-handed 310
Helix 39	AE3	5	46	66	Right-handed alpha
Helix 40	AE4	5	94	99	Right-handed alpha
Helix 41	AE5	5	99	106	Right-handed alpha
Helix 42	AE6	5	110	115	Right-handed alpha
Helix 43	AE7	5	121	135	Right-handed alpha
Helix 44	AE8	6	13	42	Right-handed alpha
Helix 45	AE9	6	45	68	Right-handed alpha
Helix 46	AF1	6	79	85	Right-handed alpha
Helix 47	AF2	6	88	107	Right-handed alpha
Helix 48	AF3	7	31	35	Right-handed 310
Helix 49	AF4	7	40	42	Right-handed 310

There are 20 sheets in PDB entry 6WB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	51	55	first strand
Strand 2	32	39	anti-parallel
Strand 3	20	26	anti-parallel
Strand 4	62	70	anti-parallel
Strand 5	80	84	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	102	109	first strand
Strand 2	90	96	anti-parallel
Strand 3	117	121	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	124	125	first strand
Strand 2	1	517	523	parallel
Strand 3	1	504	510	anti-parallel
Strand 4	1	493	499	anti-parallel
Strand 5	1	458	465	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	35	37	first strand
Strand 2	1	707	712	anti-parallel
Strand 3	1	698	703	anti-parallel
Strand 4	1	686	691	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	43	48	first strand
Strand 2	1	55	60	anti-parallel
Strand 3	1	67	73	anti-parallel
Strand 4	1	79	85	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	122	126	first strand
Strand 2	1	111	116	anti-parallel
Strand 3	1	101	106	anti-parallel
Strand 4	1	92	95	anti-parallel
Strand 5	1	133	134	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	177	179	first strand
Strand 2	1	187	190	anti-parallel
Strand 3	1	195	200	anti-parallel
Strand 4	1	207	213	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	224	226	first strand
Strand 2	1	300	302	anti-parallel
Strand 3	1	314	315	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	310	311	first strand
Strand 2	1	326	327	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	333	338	first strand
Strand 2	1	345	350	anti-parallel
Strand 3	1	355	359	anti-parallel
Strand 4	1	366	369	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	379	381	first strand
Strand 2	1	391	396	anti-parallel
Strand 3	1	384	385	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	379	381	first strand
Strand 2	1	391	396	anti-parallel
Strand 3	1	401	405	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	446	451	first strand
Strand 2	1	436	441	anti-parallel
Strand 3	1	425	431	anti-parallel
Strand 4	4	185	189	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	475	477	first strand
Strand 2	1	483	485	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	534	537	first strand
Strand 2	1	541	547	anti-parallel
Strand 3	1	555	563	anti-parallel
Strand 4	1	592	600	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	604	609	first strand
Strand 2	1	620	625	anti-parallel
Strand 3	1	630	634	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	146	147	first strand
Strand 2	3	173	174	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	72	73	first strand
Strand 2	5	84	85	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	23	25	first strand
Strand 2	7	75	78	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	61	64	first strand
Strand 2	7	44	51	anti-parallel
Strand 3	7	89	96	anti-parallel
Strand 4	7	105	112	anti-parallel
Strand 5	7	118	125	anti-parallel
Strand 6	7	148	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WB9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WB9