Analysis of interatomic Contacts of Structural Units in PDB entry:
6WBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WBD entry

There are 2 chains in PDB entry 6WBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11MET 499
B
 ASP 11PRO 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6WBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 30Right-handed alpha
Helix 2
AA2
A
42 50Right-handed alpha
Helix 3
AA3
A
57 65Right-handed alpha
Helix 4
AA4
A
101 105Right-handed alpha
Helix 5
AA5
A
105 114Right-handed alpha
Helix 6
AA6
A
167 175Right-handed alpha
Helix 7
AA7
A
176 198Right-handed alpha
Helix 8
AA8
A
238 249Right-handed alpha
Helix 9
AA9
A
284 305Right-handed alpha
Helix 10
AB1
A
327 335Right-handed alpha
Helix 11
AB2
A
340 344Right-handed 310
Helix 12
AB3
A
345 356Right-handed alpha
Helix 13
AB4
A
365 378Right-handed alpha
Helix 14
AB5
A
379 382Right-handed 310
Helix 15
AB6
A
392 396Right-handed 310
Helix 16
AB7
A
430 447Right-handed alpha
Helix 17
AB8
A
456 466Right-handed alpha
Helix 18
AB9
A
477 486Right-handed alpha
Helix 19
AC1
A
489 493Right-handed 310
Helix 20
AC2
B
12 30Right-handed alpha
Helix 21
AC3
B
42 50Right-handed alpha
Helix 22
AC4
B
57 65Right-handed alpha
Helix 23
AC5
B
101 105Right-handed alpha
Helix 24
AC6
B
105 114Right-handed alpha
Helix 25
AC7
B
162 167Right-handed alpha
Helix 26
AC8
B
167 175Right-handed alpha
Helix 27
AC9
B
176 198Right-handed alpha
Helix 28
AD1
B
238 249Right-handed alpha
Helix 29
AD2
B
284 305Right-handed alpha
Helix 30
AD3
B
327 335Right-handed alpha
Helix 31
AD4
B
340 344Right-handed 310
Helix 32
AD5
B
345 356Right-handed alpha
Helix 33
AD6
B
365 378Right-handed alpha
Helix 34
AD7
B
379 382Right-handed 310
Helix 35
AD8
B
392 396Right-handed 310
Helix 36
AD9
B
430 447Right-handed alpha
Helix 37
AE1
B
456 466Right-handed alpha
Helix 38
AE2
B
477 486Right-handed alpha
Helix 39
AE3
B
489 493Right-handed 310
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There are 8 sheets in PDB entry 6WBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 80first strand
Strand 2
A
83 90anti-parallel
Strand 3
A
93 100anti-parallel
Strand 4
A
134 145parallel
Strand 5
A
119 128anti-parallel
Strand 6
A
67 80anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
252 260parallel
Strand 3
A
272 281anti-parallel
Strand 4
A
470 476anti-parallel
Strand 5
A
419 426anti-parallel
Strand 6
A
411 416anti-parallel
Strand 7
A
386 389anti-parallel
Strand 8
A
323 326parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
230 234anti-parallel
Strand 3
A
222 225anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 311first strand
Strand 2
A
314 317anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 79first strand
Strand 2
B
83 90anti-parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
134 145parallel
Strand 5
B
119 128anti-parallel
Strand 6
B
67 79anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 203first strand
Strand 2
B
252 260parallel
Strand 3
B
272 281anti-parallel
Strand 4
B
470 476anti-parallel
Strand 5
B
419 426anti-parallel
Strand 6
B
411 416anti-parallel
Strand 7
B
386 389anti-parallel
Strand 8
B
323 326parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
230 234anti-parallel
Strand 3
B
222 225anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 311first strand
Strand 2
B
314 317anti-parallel
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