Analysis of interatomic Contacts of Structural Units in PDB entry:
6WBT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WBT entry

There are 3 chains in PDB entry 6WBT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	LYS 443
B	ASP 2	LYS 443
C	LYS 3	ARG 368

There are 79 helices in PDB entry 6WBT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	26	Right-handed alpha
Helix 2	AA2	A	42	61	Right-handed alpha
Helix 3	AA3	A	71	77	Right-handed alpha
Helix 4	AA4	A	89	104	Right-handed alpha
Helix 5	AA5	A	113	137	Right-handed alpha
Helix 6	AA6	A	150	162	Right-handed alpha
Helix 7	AA7	A	172	185	Right-handed alpha
Helix 8	AA8	A	188	190	Right-handed 310
Helix 9	AA9	A	215	227	Right-handed alpha
Helix 10	AB1	A	232	236	Right-handed 310
Helix 11	AB2	A	237	240	Right-handed 310
Helix 12	AB3	A	241	250	Right-handed alpha
Helix 13	AB4	A	250	258	Right-handed alpha
Helix 14	AB5	A	266	271	Right-handed alpha
Helix 15	AB6	A	273	278	Right-handed alpha
Helix 16	AB7	A	285	292	Right-handed alpha
Helix 17	AB8	A	295	307	Right-handed alpha
Helix 18	AB9	A	312	316	Right-handed 310
Helix 19	AC1	A	320	335	Right-handed alpha
Helix 20	AC2	A	379	403	Right-handed alpha
Helix 21	AC3	A	404	415	Right-handed alpha
Helix 22	AC4	A	420	435	Right-handed alpha
Helix 23	AC5	B	16	26	Right-handed alpha
Helix 24	AC6	B	42	61	Right-handed alpha
Helix 25	AC7	B	71	77	Right-handed alpha
Helix 26	AC8	B	89	104	Right-handed alpha
Helix 27	AC9	B	112	137	Right-handed alpha
Helix 28	AD1	B	150	162	Right-handed alpha
Helix 29	AD2	B	172	185	Right-handed alpha
Helix 30	AD3	B	188	190	Right-handed 310
Helix 31	AD4	B	215	227	Right-handed alpha
Helix 32	AD5	B	243	258	Right-handed alpha
Helix 33	AD6	B	267	272	Right-handed alpha
Helix 34	AD7	B	272	280	Right-handed alpha
Helix 35	AD8	B	285	292	Right-handed alpha
Helix 36	AD9	B	293	307	Right-handed alpha
Helix 37	AE1	B	312	316	Right-handed 310
Helix 38	AE2	B	320	335	Right-handed alpha
Helix 39	AE3	B	379	403	Right-handed alpha
Helix 40	AE4	B	404	415	Right-handed alpha
Helix 41	AE5	B	420	435	Right-handed alpha
Helix 42	AE6	C	16	26	Right-handed alpha
Helix 43	AE7	C	42	61	Right-handed alpha
Helix 44	AE8	C	71	77	Right-handed alpha
Helix 45	AE9	C	92	104	Right-handed alpha
Helix 46	AF1	C	112	138	Right-handed alpha
Helix 47	AF2	C	150	162	Right-handed alpha
Helix 48	AF3	C	172	185	Right-handed alpha
Helix 49	AF4	C	215	227	Right-handed alpha
Helix 50	AF5	C	230	236	Right-handed alpha
Helix 51	AF6	C	237	240	Right-handed 310
Helix 52	AF7	C	241	258	Right-handed alpha
Helix 53	AF8	C	266	272	Right-handed alpha
Helix 54	AF9	C	272	280	Right-handed alpha
Helix 55	AG1	C	285	290	Right-handed alpha
Helix 56	AG2	C	293	308	Right-handed alpha
Helix 57	AG3	C	313	317	Right-handed 310
Helix 58	AG4	C	319	335	Right-handed alpha
Helix 59	AG5	C	379	403	Right-handed alpha
Helix 60	AG6	C	404	415	Right-handed alpha
Helix 61	AG7	C	420	435	Right-handed alpha
Helix 62	AG8	D	16	27	Right-handed alpha
Helix 63	AG9	D	42	59	Right-handed alpha
Helix 64	AH1	D	71	77	Right-handed alpha
Helix 65	AH2	D	90	104	Right-handed alpha
Helix 66	AH3	D	113	138	Right-handed alpha
Helix 67	AH4	D	150	162	Right-handed alpha
Helix 68	AH5	D	172	186	Right-handed alpha
Helix 69	AH6	D	188	190	Right-handed 310
Helix 70	AH7	D	215	227	Right-handed alpha
Helix 71	AH8	D	250	258	Right-handed alpha
Helix 72	AH9	D	266	271	Right-handed alpha
Helix 73	AI1	D	272	280	Right-handed alpha
Helix 74	AI2	D	285	292	Right-handed alpha
Helix 75	AI3	D	293	307	Right-handed alpha
Helix 76	AI4	D	320	335	Right-handed alpha
Helix 77	AI5	D	379	403	Right-handed alpha
Helix 78	AI6	D	404	415	Right-handed alpha
Helix 79	AI7	D	420	435	Right-handed alpha

There are 13 sheets in PDB entry 6WBT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	33	39	parallel
Strand 3	A	5	10	parallel
Strand 4	A	81	84	parallel
Strand 5	A	143	146	parallel
Strand 6	A	167	170	parallel
Strand 7	A	338	345	anti-parallel
Strand 8	A	358	366	anti-parallel
Strand 9	A	369	372	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	199	first strand
Strand 2	A	202	210	anti-parallel
Strand 3	A	213	214	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	199	first strand
Strand 2	A	202	210	anti-parallel
Strand 3	A	262	263	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	33	39	parallel
Strand 3	B	5	10	parallel
Strand 4	B	81	84	parallel
Strand 5	B	143	146	parallel
Strand 6	B	167	170	parallel
Strand 7	B	338	345	anti-parallel
Strand 8	B	358	366	anti-parallel
Strand 9	B	369	372	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	199	first strand
Strand 2	B	202	210	anti-parallel
Strand 3	B	213	214	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	199	first strand
Strand 2	B	202	210	anti-parallel
Strand 3	B	262	263	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	69	first strand
Strand 2	C	33	39	parallel
Strand 3	C	5	10	parallel
Strand 4	C	81	84	parallel
Strand 5	C	143	146	parallel
Strand 6	C	167	170	parallel
Strand 7	C	338	345	anti-parallel
Strand 8	C	358	366	anti-parallel
Strand 9	C	369	372	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	199	first strand
Strand 2	C	202	210	anti-parallel
Strand 3	C	213	214	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	199	first strand
Strand 2	C	202	210	anti-parallel
Strand 3	C	262	263	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	69	first strand
Strand 2	D	33	39	parallel
Strand 3	D	5	10	parallel
Strand 4	D	81	84	parallel
Strand 5	D	143	146	parallel
Strand 6	D	167	169	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	199	first strand
Strand 2	D	202	210	anti-parallel
Strand 3	D	213	214	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	199	first strand
Strand 2	D	202	210	anti-parallel
Strand 3	D	262	263	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	345	first strand
Strand 2	D	358	366	anti-parallel
Strand 3	D	369	372	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WBT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WBT