Analysis of interatomic Contacts of Structural Units in PDB entry:
6WBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WBY entry

There is 1 chain in PDB entry 6WBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	VAL 1388

There are 40 helices in PDB entry 6WBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	27	Right-handed alpha
Helix 2	AA2	A	40	45	Right-handed alpha
Helix 3	AA3	A	45	53	Right-handed alpha
Helix 4	AA4	A	79	87	Right-handed alpha
Helix 5	AA5	A	92	117	Right-handed alpha
Helix 6	AA6	A	123	134	Right-handed alpha
Helix 7	AA7	A	135	140	Right-handed alpha
Helix 8	AA8	A	145	148	Right-handed 310
Helix 9	AA9	A	149	154	Right-handed alpha
Helix 10	AB1	A	154	166	Right-handed alpha
Helix 11	AB2	A	171	185	Right-handed alpha
Helix 12	AB3	A	190	198	Right-handed alpha
Helix 13	AB4	A	199	207	Right-handed alpha
Helix 14	AB5	A	211	229	Right-handed alpha
Helix 15	AB6	A	232	243	Right-handed alpha
Helix 16	AB7	A	263	268	Right-handed alpha
Helix 17	AB8	A	291	308	Right-handed alpha
Helix 18	AB9	A	314	328	Right-handed alpha
Helix 19	AC1	A	362	378	Right-handed alpha
Helix 20	AC2	A	405	419	Right-handed alpha
Helix 21	AC3	A	419	424	Right-handed alpha
Helix 22	AC4	A	437	448	Right-handed alpha
Helix 23	AC5	A	495	503	Right-handed alpha
Helix 24	AC6	A	505	512	Right-handed alpha
Helix 25	AC7	A	517	525	Right-handed alpha
Helix 26	AC8	A	545	554	Right-handed alpha
Helix 27	AC9	A	581	583	Right-handed 310
Helix 28	AD1	A	618	620	Right-handed 310
Helix 29	AD2	A	621	632	Right-handed alpha
Helix 30	AD3	A	644	649	Right-handed alpha
Helix 31	AD4	A	728	732	Right-handed 310
Helix 32	AD5	A	934	940	Right-handed alpha
Helix 33	AD6	A	959	964	Right-handed 310
Helix 34	AD7	A	1091	1096	Right-handed alpha
Helix 35	AD8	A	1125	1130	Right-handed alpha
Helix 36	AD9	A	1255	1264	Right-handed alpha
Helix 37	AE1	A	1268	1278	Right-handed alpha
Helix 38	AE2	A	1296	1307	Right-handed alpha
Helix 39	AE3	A	1336	1356	Right-handed alpha
Helix 40	AE4	A	1369	1385	Right-handed alpha

There are 16 sheets in PDB entry 6WBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	65	66	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	459	first strand
Strand 2	A	527	533	parallel
Strand 3	A	588	595	anti-parallel
Strand 4	A	559	568	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	579	first strand
Strand 2	A	1059	1061	parallel
Strand 3	A	1067	1069	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1181	1182	first strand
Strand 2	A	605	608	anti-parallel
Strand 3	A	1204	1211	anti-parallel
Strand 4	A	1235	1240	anti-parallel
Strand 5	A	1227	1231	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	642	first strand
Strand 2	A	614	615	parallel
Strand 3	A	656	659	parallel
Strand 4	A	873	877	parallel
Strand 5	A	1161	1169	anti-parallel
Strand 6	A	922	929	anti-parallel
Strand 7	A	1134	1135	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	708	first strand
Strand 2	A	857	858	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	714	first strand
Strand 2	A	757	766	anti-parallel
Strand 3	A	816	823	anti-parallel
Strand 4	A	786	791	anti-parallel
Strand 5	A	794	799	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	746	first strand
Strand 2	A	836	844	anti-parallel
Strand 3	A	770	775	anti-parallel
Strand 4	A	807	810	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	746	first strand
Strand 2	A	836	844	anti-parallel
Strand 3	A	852	854	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	862	first strand
Strand 2	A	909	915	parallel
Strand 3	A	1149	1156	anti-parallel
Strand 4	A	1109	1112	anti-parallel
Strand 5	A	1116	1123	anti-parallel
Strand 6	A	1100	1102	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	862	first strand
Strand 2	A	909	915	parallel
Strand 3	A	1149	1156	anti-parallel
Strand 4	A	1109	1112	anti-parallel
Strand 5	A	1116	1123	anti-parallel
Strand 6	A	1137	1138	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	886	887	first strand
Strand 2	A	894	895	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	946	948	first strand
Strand 2	A	986	990	anti-parallel
Strand 3	A	1048	1051	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1036	1037	first strand
Strand 2	A	1000	1002	anti-parallel
Strand 3	A	1078	1079	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1027	1028	first strand
Strand 2	A	1013	1016	anti-parallel
Strand 3	A	1054	1055	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1185	1186	first strand
Strand 2	A	1192	1197	anti-parallel
Strand 3	A	1246	1251	anti-parallel
Strand 4	A	1217	1219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WBY