Analysis of interatomic Contacts of Structural Units in PDB entry:
6WC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WC0 entry

There are 4 chains in PDB entry 6WC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7TRP 1133
B
 G 2 C 94
C
 C -10 C 20
D
 A 1 G 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6WC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 91Right-handed alpha
Helix 2
AA2
A
104 116Right-handed alpha
Helix 3
AA3
A
120 138Right-handed alpha
Helix 4
AA4
A
147 153Right-handed alpha
Helix 5
AA5
A
158 173Right-handed alpha
Helix 6
AA6
A
180 192Right-handed alpha
Helix 7
AA7
A
221 237Right-handed alpha
Helix 8
AA8
A
239 251Right-handed alpha
Helix 9
AA9
A
279 293Right-handed alpha
Helix 10
AB1
A
306 320Right-handed alpha
Helix 11
AB2
A
326 334Right-handed alpha
Helix 12
AB3
A
339 341Right-handed 310
Helix 13
AB4
A
364 377Right-handed alpha
Helix 14
AB5
A
381 391Right-handed alpha
Helix 15
AB6
A
392 407Right-handed alpha
Helix 16
AB7
A
421 426Right-handed alpha
Helix 17
AB8
A
427 431Right-handed 310
Helix 18
AB9
A
442 455Right-handed alpha
Helix 19
AC1
A
458 467Right-handed alpha
Helix 20
AC2
A
486 507Right-handed alpha
Helix 21
AC3
A
683 703Right-handed alpha
Helix 22
AC4
A
713 720Right-handed alpha
Helix 23
AC5
A
725 730Right-handed alpha
Helix 24
AC6
A
748 758Right-handed alpha
Helix 25
AC7
A
761 778Right-handed alpha
Helix 26
AC8
A
797 808Right-handed alpha
Helix 27
AC9
A
809 820Right-handed alpha
Helix 28
AD1
A
856 861Right-handed alpha
Helix 29
AD2
A
864 876Right-handed alpha
Helix 30
AD3
A
957 963Right-handed alpha
Helix 31
AD4
A
981 986Right-handed alpha
Helix 32
AD5
A
988 997Right-handed alpha
Helix 33
AD6
A
1024 1033Right-handed alpha
Helix 34
AD7
A
1057 1071Right-handed alpha
Helix 35
AD8
A
1076 1086Right-handed alpha
Helix 36
AD9
A
1094 1099Right-handed alpha
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There are 8 sheets in PDB entry 6WC0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
706 711first strand
Strand 2
A
512 517parallel
Strand 3
A
13 19parallel
Strand 4
A
23 32anti-parallel
Strand 5
A
35 46anti-parallel
Strand 6
A
824 826parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 276first strand
Strand 2
A
437 441anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
294 296anti-parallel
Strand 3
A
343 345anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
846 849first strand
Strand 2
A
911 914anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 855first strand
Strand 2
A
889 891anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
921 924first strand
Strand 2
A
927 930anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
948 956first strand
Strand 2
A
934 943anti-parallel
Strand 3
A
1001 1006anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1090 1093first strand
Strand 2
A
1048 1053anti-parallel
Strand 3
A
1037 1045anti-parallel
Strand 4
A
1011 1013anti-parallel
Strand 5
A
1104 1106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il