Analysis of interatomic Contacts of Structural Units in PDB entry:
6WCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WCD entry

There is 1 chain in PDB entry 6WCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6WCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
17 26Right-handed alpha
Helix 3
AA3
A
38 42Right-handed 310
Helix 4
AA4
A
43 48Right-handed alpha
Helix 5
AA5
A
74 77Right-handed 310
Helix 6
AA6
A
106 115Right-handed alpha
Helix 7
AA7
A
151 174Right-handed alpha
Helix 8
AA8
A
189 193Right-handed 310
Helix 9
AA9
A
201 204Right-handed 310
Helix 10
AB1
A
205 215Right-handed alpha
Helix 11
AB2
A
242 247Right-handed alpha
Helix 12
AB3
A
262 267Right-handed alpha
Helix 13
AB4
A
279 285Right-handed alpha
Helix 14
AB5
A
321 329Right-handed 310
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There are 4 sheets in PDB entry 6WCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
68 72anti-parallel
Strand 3
A
29 33anti-parallel
Strand 4
A
2 7parallel
Strand 5
A
303 307anti-parallel
Strand 6
A
286 291anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
119 127anti-parallel
Strand 3
A
133 142anti-parallel
Strand 4
A
177 183parallel
Strand 5
A
273 278anti-parallel
Strand 6
A
239 241anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
119 127anti-parallel
Strand 3
A
310 312anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
269 270anti-parallel
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