Analysis of interatomic Contacts of Structural Units in PDB entry:
6WCQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WCQ entry

There are 4 chains in PDB entry 6WCQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2CYS 160
B
 PRO 319THR 693
C
 ARG 50LEU 179
D
 ILE 15LYS 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6WCQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 23Right-handed alpha
Helix 2
AA2
A
24 35Right-handed alpha
Helix 3
AA3
A
51 65Right-handed alpha
Helix 4
AA4
A
86 93Right-handed alpha
Helix 5
AA5
A
96 110Right-handed alpha
Helix 6
AA6
A
112 128Right-handed alpha
Helix 7
AA7
A
131 140Right-handed alpha
Helix 8
AA8
A
146 157Right-handed alpha
Helix 9
AA9
B
320 324Right-handed 310
Helix 10
AB1
B
325 335Right-handed alpha
Helix 11
AB2
B
337 344Right-handed alpha
Helix 12
AB3
B
345 348Right-handed 310
Helix 13
AB4
B
349 358Right-handed alpha
Helix 14
AB5
B
369 373Right-handed 310
Helix 15
AB6
B
375 385Right-handed alpha
Helix 16
AB7
B
400 411Right-handed alpha
Helix 17
AB8
B
426 437Right-handed alpha
Helix 18
AB9
B
452 463Right-handed alpha
Helix 19
AC1
B
478 488Right-handed alpha
Helix 20
AC2
B
504 513Right-handed alpha
Helix 21
AC3
B
529 534Right-handed alpha
Helix 22
AC4
B
535 539Right-handed 310
Helix 23
AC5
B
554 565Right-handed alpha
Helix 24
AC6
B
580 591Right-handed alpha
Helix 25
AC7
B
605 616Right-handed alpha
Helix 26
AC8
B
631 642Right-handed alpha
Helix 27
AC9
B
657 668Right-handed alpha
Helix 28
AD1
B
675 689Right-handed alpha
Helix 29
AD2
C
62 74Right-handed alpha
Helix 30
AD3
C
96 104Right-handed alpha
Helix 31
AD4
C
104 112Right-handed alpha
Helix 32
AD5
C
129 143Right-handed alpha
Helix 33
AD6
C
151 163Right-handed alpha
Helix 34
AD7
C
164 178Right-handed alpha
Helix 35
AD8
D
20 32Right-handed alpha
Helix 36
AD9
D
38 53Right-handed alpha
Helix 37
AE1
D
85 102Right-handed alpha
Helix 38
AE2
D
113 137Right-handed alpha
Helix 39
AE3
D
137 143Right-handed alpha
Helix 40
AE4
D
159 168Right-handed alpha
Helix 41
AE5
D
175 189Right-handed alpha
Helix 42
AE6
D
197 211Right-handed alpha
Helix 43
AE7
D
226 232Right-handed alpha
Helix 44
AE8
D
232 255Right-handed alpha
Helix 45
AE9
D
256 279Right-handed alpha
Helix 46
AF1
D
280 283Right-handed 310
Helix 47
AF2
D
284 297Right-handed alpha
Helix 48
AF3
D
299 313Right-handed alpha
Helix 49
AF4
D
315 327Right-handed alpha
Helix 50
AF5
D
333 356Right-handed alpha
Helix 51
AF6
D
362 384Right-handed alpha
Helix 52
AF7
D
388 400Right-handed alpha
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There are 4 sheets in PDB entry 6WCQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
4 7anti-parallel
Strand 3
A
45 46parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 366first strand
Strand 2
B
390 392parallel
Strand 3
B
416 419parallel
Strand 4
B
442 445parallel
Strand 5
B
468 472parallel
Strand 6
B
494 498parallel
Strand 7
B
520 524parallel
Strand 8
B
544 546parallel
Strand 9
B
570 572parallel
Strand 10
B
596 598parallel
Strand 11
B
621 623parallel
Strand 12
B
647 649parallel
Strand 13
B
672 673parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 55first strand
Strand 2
C
144 148anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 95first strand
Strand 2
C
79 83anti-parallel
Strand 3
C
121 125parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il