Analysis of interatomic Contacts of Structural Units in PDB entry:
6WDN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WDN entry

There are 10 chains in PDB entry 6WDN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 84SER 418
B
 SER 104GLU 466
F
 VAL 48PHE 98
C
 SER 169HIS 341
D
 VAL 48HIS 95
G
 ALA 173GLN 346
H
 VAL 48ASP 96
I
 ASN 177ASP 336
J
 VAL 48GLU 93
E
 HIS 170PRO 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 6WDN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 94Right-handed alpha
Helix 2
AA2
A
105 115Right-handed alpha
Helix 3
AA3
A
128 140Right-handed alpha
Helix 4
AA4
A
159 172Right-handed alpha
Helix 5
AA5
A
174 185Right-handed alpha
Helix 6
AA6
A
193 207Right-handed alpha
Helix 7
AA7
A
232 239Right-handed alpha
Helix 8
AA8
A
249 272Right-handed alpha
Helix 9
AA9
A
279 288Right-handed alpha
Helix 10
AB1
A
293 306Right-handed alpha
Helix 11
AB2
A
314 325Right-handed alpha
Helix 12
AB3
A
327 341Right-handed alpha
Helix 13
AB4
A
346 359Right-handed alpha
Helix 14
AB5
A
363 375Right-handed alpha
Helix 15
AB6
A
383 393Right-handed alpha
Helix 16
AB7
A
402 418Right-handed alpha
Helix 17
AB8
B
111 120Right-handed alpha
Helix 18
AB9
B
123 132Right-handed alpha
Helix 19
AC1
B
148 155Right-handed alpha
Helix 20
AC2
B
193 198Right-handed 310
Helix 21
AC3
B
205 217Right-handed alpha
Helix 22
AC4
B
219 231Right-handed alpha
Helix 23
AC5
B
241 252Right-handed alpha
Helix 24
AC6
B
253 258Right-handed 310
Helix 25
AC7
B
263 267Right-handed 310
Helix 26
AC8
B
278 284Right-handed alpha
Helix 27
AC9
B
293 314Right-handed alpha
Helix 28
AD1
B
317 321Right-handed 310
Helix 29
AD2
B
323 333Right-handed alpha
Helix 30
AD3
B
338 352Right-handed alpha
Helix 31
AD4
B
360 372Right-handed alpha
Helix 32
AD5
B
373 387Right-handed alpha
Helix 33
AD6
B
392 403Right-handed alpha
Helix 34
AD7
B
409 421Right-handed alpha
Helix 35
AD8
B
429 442Right-handed alpha
Helix 36
AD9
B
453 465Right-handed alpha
Helix 37
AE1
F
65 70Right-handed alpha
Helix 38
AE2
F
70 90Right-handed alpha
Helix 39
AE3
F
91 93Right-handed 310
Helix 40
AE4
C
174 190Right-handed alpha
Helix 41
AE5
C
191 200Right-handed alpha
Helix 42
AE6
C
200 209Right-handed alpha
Helix 43
AE7
C
209 214Right-handed alpha
Helix 44
AE8
C
215 220Right-handed alpha
Helix 45
AE9
C
220 241Right-handed alpha
Helix 46
AF1
C
241 253Right-handed alpha
Helix 47
AF2
C
264 269Right-handed alpha
Helix 48
AF3
C
270 275Right-handed alpha
Helix 49
AF4
C
279 286Right-handed alpha
Helix 50
AF5
C
290 311Right-handed alpha
Helix 51
AF6
C
313 330Right-handed alpha
Helix 52
AF7
C
330 335Right-handed alpha
Helix 53
AF8
D
65 72Right-handed alpha
Helix 54
AF9
D
75 93Right-handed alpha
Helix 55
AG1
G
174 190Right-handed alpha
Helix 56
AG2
G
191 228Right-handed alpha
Helix 57
AG3
G
233 249Right-handed alpha
Helix 58
AG4
G
251 256Right-handed alpha
Helix 59
AG5
G
259 264Right-handed alpha
Helix 60
AG6
G
265 270Right-handed alpha
Helix 61
AG7
G
270 275Right-handed alpha
Helix 62
AG8
G
279 285Right-handed alpha
Helix 63
AG9
G
290 310Right-handed alpha
Helix 64
AH1
G
313 340Right-handed alpha
Helix 65
AH2
H
65 73Right-handed alpha
Helix 66
AH3
H
75 93Right-handed alpha
Helix 67
AH4
I
178 189Right-handed alpha
Helix 68
AH5
I
192 225Right-handed alpha
Helix 69
AH6
I
229 232Right-handed 310
Helix 70
AH7
I
233 254Right-handed alpha
Helix 71
AH8
I
273 275Right-handed 310
Helix 72
AH9
I
276 281Right-handed alpha
Helix 73
AI1
I
281 286Right-handed alpha
Helix 74
AI2
I
290 311Right-handed alpha
Helix 75
AI3
I
313 330Right-handed alpha
Helix 76
AI4
J
67 72Right-handed alpha
Helix 77
AI5
J
74 79Right-handed alpha
Helix 78
AI6
J
79 93Right-handed alpha
Helix 79
AI7
E
171 190Right-handed alpha
Helix 80
AI8
E
191 207Right-handed alpha
Helix 81
AI9
E
207 219Right-handed alpha
Helix 82
AJ1
E
220 248Right-handed alpha
Helix 83
AJ2
E
248 253Right-handed alpha
Helix 84
AJ3
E
259 264Right-handed alpha
Helix 85
AJ4
E
279 285Right-handed alpha
Helix 86
AJ5
E
290 310Right-handed alpha
Helix 87
AJ6
E
313 335Right-handed alpha
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There are 4 sheets in PDB entry 6WDN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
96 98anti-parallel
Strand 3
A
125 126parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
247 248anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
172 174parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
291 292anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il