Analysis of interatomic Contacts of Structural Units in PDB entry:
6WDO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WDO entry

There are 20 chains in PDB entry 6WDO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	VAL 75	ASP 336
H	VAL 48	PHE 98
C	ASP 74	HIS 341
D	VAL 48	PHE 98
A	ASP 74	GLN 346
B	VAL 48	PRO 100
E	ASP 74	PRO 343
F	VAL 48	ILE 97
I	ASP 74	GLN 346
J	VAL 48	PRO 100
K	ASP 74	HIS 341
L	VAL 48	PHE 98
O	VAL 75	ASP 336
P	VAL 48	PHE 98
M	ASP 74	PRO 343
N	VAL 48	PHE 98
Q	SER 104	MET 442
R	LEU 85	ARG 394
S	SER 104	MET 442
T	LEU 85	ARG 394

There are144 helices in PDB entry 6WDO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	107	117	Right-handed alpha
Helix 2	AA2	G	140	146	Right-handed alpha
Helix 3	AA3	G	175	248	Right-handed alpha
Helix 4	AA4	G	263	286	Right-handed alpha
Helix 5	AA5	G	290	309	Right-handed alpha
Helix 6	AA6	G	313	334	Right-handed alpha
Helix 7	AA7	H	65	94	Right-handed alpha
Helix 8	AA8	C	91	95	Right-handed 310
Helix 9	AA9	C	107	117	Right-handed alpha
Helix 10	AB1	C	140	146	Right-handed alpha
Helix 11	AB2	C	171	190	Right-handed alpha
Helix 12	AB3	C	191	257	Right-handed alpha
Helix 13	AB4	C	259	286	Right-handed alpha
Helix 14	AB5	C	290	311	Right-handed alpha
Helix 15	AB6	C	313	335	Right-handed alpha
Helix 16	AB7	D	65	72	Right-handed alpha
Helix 17	AB8	D	73	97	Right-handed alpha
Helix 18	AB9	A	107	119	Right-handed alpha
Helix 19	AC1	A	140	146	Right-handed alpha
Helix 20	AC2	A	171	191	Right-handed alpha
Helix 21	AC3	A	192	249	Right-handed alpha
Helix 22	AC4	A	251	255	Right-handed 310
Helix 23	AC5	A	263	285	Right-handed alpha
Helix 24	AC6	A	290	311	Right-handed alpha
Helix 25	AC7	A	314	334	Right-handed alpha
Helix 26	AC8	A	334	340	Right-handed alpha
Helix 27	AC9	B	65	94	Right-handed alpha
Helix 28	AD1	E	107	119	Right-handed alpha
Helix 29	AD2	E	140	146	Right-handed alpha
Helix 30	AD3	E	169	190	Right-handed alpha
Helix 31	AD4	E	191	253	Right-handed alpha
Helix 32	AD5	E	263	285	Right-handed alpha
Helix 33	AD6	E	290	310	Right-handed alpha
Helix 34	AD7	E	313	335	Right-handed alpha
Helix 35	AD8	F	65	93	Right-handed alpha
Helix 36	AD9	I	107	118	Right-handed alpha
Helix 37	AE1	I	140	146	Right-handed alpha
Helix 38	AE2	I	171	249	Right-handed alpha
Helix 39	AE3	I	259	262	Right-handed 310
Helix 40	AE4	I	263	285	Right-handed alpha
Helix 41	AE5	I	290	311	Right-handed alpha
Helix 42	AE6	I	314	340	Right-handed alpha
Helix 43	AE7	J	66	80	Right-handed alpha
Helix 44	AE8	J	80	92	Right-handed alpha
Helix 45	AE9	K	91	95	Right-handed 310
Helix 46	AF1	K	107	119	Right-handed alpha
Helix 47	AF2	K	140	146	Right-handed alpha
Helix 48	AF3	K	171	190	Right-handed alpha
Helix 49	AF4	K	191	257	Right-handed alpha
Helix 50	AF5	K	259	286	Right-handed alpha
Helix 51	AF6	K	290	309	Right-handed alpha
Helix 52	AF7	K	313	335	Right-handed alpha
Helix 53	AF8	L	65	71	Right-handed alpha
Helix 54	AF9	L	75	94	Right-handed alpha
Helix 55	AG1	O	107	118	Right-handed alpha
Helix 56	AG2	O	140	146	Right-handed alpha
Helix 57	AG3	O	175	248	Right-handed alpha
Helix 58	AG4	O	248	253	Right-handed alpha
Helix 59	AG5	O	265	286	Right-handed alpha
Helix 60	AG6	O	290	310	Right-handed alpha
Helix 61	AG7	O	314	334	Right-handed alpha
Helix 62	AG8	P	65	96	Right-handed alpha
Helix 63	AG9	M	107	119	Right-handed alpha
Helix 64	AH1	M	140	146	Right-handed alpha
Helix 65	AH2	M	169	190	Right-handed alpha
Helix 66	AH3	M	191	256	Right-handed alpha
Helix 67	AH4	M	264	268	Right-handed 310
Helix 68	AH5	M	270	285	Right-handed alpha
Helix 69	AH6	M	290	310	Right-handed alpha
Helix 70	AH7	M	313	335	Right-handed alpha
Helix 71	AH8	N	65	79	Right-handed alpha
Helix 72	AH9	N	79	93	Right-handed alpha
Helix 73	AI1	Q	110	121	Right-handed alpha
Helix 74	AI2	Q	123	130	Right-handed alpha
Helix 75	AI3	Q	150	156	Right-handed 310
Helix 76	AI4	Q	193	198	Right-handed 310
Helix 77	AI5	Q	206	218	Right-handed alpha
Helix 78	AI6	Q	219	231	Right-handed alpha
Helix 79	AI7	Q	239	249	Right-handed alpha
Helix 80	AI8	Q	277	283	Right-handed alpha
Helix 81	AI9	Q	292	294	Right-handed 310
Helix 82	AJ1	Q	295	315	Right-handed alpha
Helix 83	AJ2	Q	317	319	Right-handed 310
Helix 84	AJ3	Q	323	336	Right-handed alpha
Helix 85	AJ4	Q	339	353	Right-handed alpha
Helix 86	AJ5	Q	361	373	Right-handed alpha
Helix 87	AJ6	Q	373	381	Right-handed alpha
Helix 88	AJ7	Q	381	386	Right-handed alpha
Helix 89	AJ8	Q	394	405	Right-handed alpha
Helix 90	AJ9	Q	410	420	Right-handed alpha
Helix 91	AK1	Q	433	441	Right-handed alpha
Helix 92	AK2	R	86	94	Right-handed alpha
Helix 93	AK3	R	105	115	Right-handed alpha
Helix 94	AK4	R	124	129	Right-handed 310
Helix 95	AK5	R	130	140	Right-handed alpha
Helix 96	AK6	R	160	171	Right-handed alpha
Helix 97	AK7	R	173	184	Right-handed alpha
Helix 98	AK8	R	188	207	Right-handed alpha
Helix 99	AK9	R	232	240	Right-handed alpha
Helix 100	AL1	R	248	273	Right-handed alpha
Helix 101	AL2	R	281	292	Right-handed alpha
Helix 102	AL3	R	296	307	Right-handed alpha
Helix 103	AL4	R	314	327	Right-handed alpha
Helix 104	AL5	R	327	335	Right-handed alpha
Helix 105	AL6	R	335	342	Right-handed alpha
Helix 106	AL7	R	346	359	Right-handed alpha
Helix 107	AL8	R	363	375	Right-handed alpha
Helix 108	AL9	R	383	392	Right-handed alpha
Helix 109	AM1	S	110	121	Right-handed alpha
Helix 110	AM2	S	123	130	Right-handed alpha
Helix 111	AM3	S	150	156	Right-handed 310
Helix 112	AM4	S	193	198	Right-handed 310
Helix 113	AM5	S	206	218	Right-handed alpha
Helix 114	AM6	S	219	231	Right-handed alpha
Helix 115	AM7	S	239	249	Right-handed alpha
Helix 116	AM8	S	277	283	Right-handed alpha
Helix 117	AM9	S	292	294	Right-handed 310
Helix 118	AN1	S	295	315	Right-handed alpha
Helix 119	AN2	S	317	319	Right-handed 310
Helix 120	AN3	S	323	336	Right-handed alpha
Helix 121	AN4	S	339	353	Right-handed alpha
Helix 122	AN5	S	361	373	Right-handed alpha
Helix 123	AN6	S	373	381	Right-handed alpha
Helix 124	AN7	S	381	386	Right-handed alpha
Helix 125	AN8	S	394	405	Right-handed alpha
Helix 126	AN9	S	410	420	Right-handed alpha
Helix 127	AO1	S	433	441	Right-handed alpha
Helix 128	AO2	T	86	94	Right-handed alpha
Helix 129	AO3	T	105	115	Right-handed alpha
Helix 130	AO4	T	124	129	Right-handed 310
Helix 131	AO5	T	130	140	Right-handed alpha
Helix 132	AO6	T	160	171	Right-handed alpha
Helix 133	AO7	T	173	184	Right-handed alpha
Helix 134	AO8	T	188	207	Right-handed alpha
Helix 135	AO9	T	232	240	Right-handed alpha
Helix 136	AP1	T	248	273	Right-handed alpha
Helix 137	AP2	T	281	292	Right-handed alpha
Helix 138	AP3	T	296	307	Right-handed alpha
Helix 139	AP4	T	314	327	Right-handed alpha
Helix 140	AP5	T	327	335	Right-handed alpha
Helix 141	AP6	T	335	342	Right-handed alpha
Helix 142	AP7	T	346	359	Right-handed alpha
Helix 143	AP8	T	363	375	Right-handed alpha
Helix 144	AP9	T	383	392	Right-handed alpha

There are 23 sheets in PDB entry 6WDO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	89	first strand
Strand 2	G	96	97	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	128	first strand
Strand 2	G	149	152	anti-parallel
Strand 3	G	157	160	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	135	first strand
Strand 2	E	96	100	parallel
Strand 3	E	83	89	anti-parallel
Strand 4	E	76	80	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	83	86	anti-parallel
Strand 3	C	99	100	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	128	first strand
Strand 2	C	149	152	anti-parallel
Strand 3	C	157	160	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	135	first strand
Strand 2	A	96	98	parallel
Strand 3	A	83	89	anti-parallel
Strand 4	A	76	80	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	149	152	anti-parallel
Strand 3	A	157	160	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	128	first strand
Strand 2	E	149	152	anti-parallel
Strand 3	E	157	160	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	80	first strand
Strand 2	I	83	87	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	97	98	first strand
Strand 2	K	134	135	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	126	128	first strand
Strand 2	I	150	152	anti-parallel
Strand 3	I	157	159	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	77	80	first strand
Strand 2	K	83	86	anti-parallel
Strand 3	K	97	100	anti-parallel
Strand 4	M	134	135	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	125	128	first strand
Strand 2	K	149	153	anti-parallel
Strand 3	K	156	160	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	88	89	first strand
Strand 2	O	96	97	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	126	128	first strand
Strand 2	O	149	152	anti-parallel
Strand 3	O	157	160	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	76	80	first strand
Strand 2	M	83	87	anti-parallel
Strand 3	M	98	100	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	149	152	first strand
Strand 2	M	157	160	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	321	322	first strand
Strand 2	Q	359	360	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	103	104	first strand
Strand 2	R	158	159	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	278	279	first strand
Strand 2	R	312	313	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	321	322	first strand
Strand 2	S	359	360	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	103	104	first strand
Strand 2	T	158	159	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	278	279	first strand
Strand 2	T	312	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WDO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WDO