Analysis of interatomic Contacts of Structural Units in PDB entry:
6WDQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WDQ entry

There are 4 chains in PDB entry 6WDQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 21	CYS 327
B	PRO 28	GLY 190
C	GLY 24	PRO 316
D	SER 27	LYS 138

There are 10 helices in PDB entry 6WDQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	85	Right-handed 310
Helix 2	AA2	A	228	233	Right-handed 310
Helix 3	AA3	B	29	48	Right-handed alpha
Helix 4	AA4	B	51	54	Right-handed 310
Helix 5	AA5	B	78	85	Right-handed alpha
Helix 6	AA6	B	86	105	Right-handed alpha
Helix 7	AA7	B	119	136	Right-handed alpha
Helix 8	AA8	B	154	187	Right-handed alpha
Helix 9	AA9	C	184	186	Right-handed 310
Helix 10	AB1	D	133	137	Right-handed 310

There are 18 sheets in PDB entry 6WDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	30	37	anti-parallel
Strand 3	A	95	108	parallel
Strand 4	A	86	92	anti-parallel
Strand 5	A	60	62	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	30	37	anti-parallel
Strand 3	A	95	108	parallel
Strand 4	A	111	112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	49	first strand
Strand 2	A	74	79	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	139	146	anti-parallel
Strand 3	A	185	195	anti-parallel
Strand 4	A	174	180	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	139	146	anti-parallel
Strand 3	A	185	195	anti-parallel
Strand 4	A	166	170	anti-parallel
Strand 5	A	152	160	anti-parallel
Strand 6	A	208	216	anti-parallel
Strand 7	A	219	227	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	246	first strand
Strand 2	A	251	257	anti-parallel
Strand 3	A	295	298	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	291	first strand
Strand 2	A	271	278	anti-parallel
Strand 3	A	305	312	anti-parallel
Strand 4	A	323	326	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	C	111	122	parallel
Strand 3	C	41	43	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	C	111	122	parallel
Strand 3	C	96	104	anti-parallel
Strand 4	C	64	68	anti-parallel
Strand 5	C	71	72	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	37	first strand
Strand 2	C	48	54	anti-parallel
Strand 3	C	84	89	anti-parallel
Strand 4	C	77	81	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	182	first strand
Strand 2	C	141	147	anti-parallel
Strand 3	C	129	136	anti-parallel
Strand 4	C	218	219	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	157	164	anti-parallel
Strand 3	C	191	200	anti-parallel
Strand 4	C	203	206	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	157	164	anti-parallel
Strand 3	C	191	200	anti-parallel
Strand 4	C	210	213	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	231	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	278	283	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	270	first strand
Strand 2	C	251	259	anti-parallel
Strand 3	C	290	298	anti-parallel
Strand 4	C	311	312	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	54	first strand
Strand 2	D	59	67	anti-parallel
Strand 3	D	96	100	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	92	first strand
Strand 2	D	74	80	anti-parallel
Strand 3	D	111	118	anti-parallel
Strand 4	D	123	125	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	92	first strand
Strand 2	D	74	80	anti-parallel
Strand 3	D	111	118	anti-parallel
Strand 4	D	129	131	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WDQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WDQ