Analysis of interatomic Contacts of Structural Units in PDB entry:
6WDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WDS entry

There are 6 chains in PDB entry 6WDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 SER 2LEU 107
A
 GLU 2VAL 295
B
 SER 10THR 247
C
 GLY 1ALA 245
D
 ILE 29GLU 58
H
 VAL 2VAL 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6WDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
38 43Right-handed alpha
Helix 3
AA3
A
54 57Right-handed 310
Helix 4
AA4
A
58 64Right-handed alpha
Helix 5
AA5
A
100 108Right-handed alpha
Helix 6
AA6
A
160 165Right-handed 310
Helix 7
AA7
B
35 37Right-handed 310
Helix 8
AA8
B
56 61Right-handed alpha
Helix 9
AA9
B
83 87Right-handed 310
Helix 10
AB1
B
89 98Right-handed alpha
Helix 11
AB2
B
142 147Right-handed alpha
Helix 12
AB3
B
148 152Right-handed 310
Helix 13
AB4
B
166 173Right-handed 310
Helix 14
AB5
C
42 48Right-handed alpha
Helix 15
AB6
C
62 68Right-handed 310
Helix 16
AB7
C
97 104Right-handed alpha
Helix 17
AB8
C
143 148Right-handed alpha
Helix 18
AB9
D
49 54Right-handed alpha
Helix 19
AC1
H
86 90Right-handed 310
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There are 17 sheets in PDB entry 6WDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 10first strand
Strand 2
L
104 106parallel
Strand 3
L
85 93anti-parallel
Strand 4
L
35 39anti-parallel
Strand 5
L
46 49anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 10first strand
Strand 2
L
104 106parallel
Strand 3
L
85 93anti-parallel
Strand 4
L
98 101anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
17 22first strand
Strand 2
L
72 77anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
D
46 47anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
C
162 167anti-parallel
Strand 3
C
113 119anti-parallel
Strand 4
C
210 218anti-parallel
Strand 5
C
69 71anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 76first strand
Strand 2
A
233 251anti-parallel
Strand 3
A
110 127anti-parallel
Strand 4
A
180 184anti-parallel
Strand 5
C
22 23parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
110 127anti-parallel
Strand 3
A
233 251anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
218 224anti-parallel
Strand 3
A
142 149anti-parallel
Strand 4
A
169 174anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
21 25anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
185 190parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
227 242anti-parallel
Strand 5
B
64 65anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
185 190parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
227 242anti-parallel
Strand 5
B
69 70anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
207 218anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
175 179anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
191 201anti-parallel
Strand 3
C
126 134anti-parallel
Strand 4
C
151 156anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 110first strand
Strand 2
C
223 227anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 5first strand
Strand 2
H
21 23anti-parallel
Strand 3
H
77 78anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
45 50first strand
Strand 2
H
33 37anti-parallel
Strand 3
H
91 98anti-parallel
Strand 4
H
105 108anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
45 50first strand
Strand 2
H
33 37anti-parallel
Strand 3
H
91 98anti-parallel
Strand 4
H
112 114anti-parallel
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