Analysis of interatomic Contacts of Structural Units in PDB entry:
6WEJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WEJ entry

There are 4 chains in PDB entry 6WEJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 104	LYS 619
B	ARG 104	LYS 619
C	ARG 104	LYS 619
D	ARG 104	LYS 619

There are 76 helices in PDB entry 6WEJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	112	Right-handed alpha
Helix 2	AA2	A	119	145	Right-handed alpha
Helix 3	AA3	A	193	224	Right-handed alpha
Helix 4	AA4	A	236	247	Right-handed alpha
Helix 5	AA5	A	248	256	Right-handed alpha
Helix 6	AA6	A	257	258	Right-handed 310
Helix 7	AA7	A	259	263	Right-handed 310
Helix 8	AA8	A	276	285	Right-handed 310
Helix 9	AA9	A	286	301	Right-handed alpha
Helix 10	AB1	A	303	335	Right-handed alpha
Helix 11	AB2	A	358	375	Right-handed alpha
Helix 12	AB3	A	385	418	Right-handed alpha
Helix 13	AB4	A	418	438	Right-handed alpha
Helix 14	AB5	A	441	457	Right-handed alpha
Helix 15	AB6	A	464	471	Right-handed alpha
Helix 16	AB7	A	472	489	Right-handed alpha
Helix 17	AB8	A	498	508	Right-handed alpha
Helix 18	AB9	A	592	601	Right-handed alpha
Helix 19	AC1	A	602	619	Right-handed alpha
Helix 20	AC2	B	105	112	Right-handed alpha
Helix 21	AC3	B	119	145	Right-handed alpha
Helix 22	AC4	B	193	224	Right-handed alpha
Helix 23	AC5	B	236	247	Right-handed alpha
Helix 24	AC6	B	248	256	Right-handed alpha
Helix 25	AC7	B	257	258	Right-handed 310
Helix 26	AC8	B	259	263	Right-handed 310
Helix 27	AC9	B	276	285	Right-handed 310
Helix 28	AD1	B	286	301	Right-handed alpha
Helix 29	AD2	B	303	335	Right-handed alpha
Helix 30	AD3	B	358	375	Right-handed alpha
Helix 31	AD4	B	385	418	Right-handed alpha
Helix 32	AD5	B	418	438	Right-handed alpha
Helix 33	AD6	B	441	457	Right-handed alpha
Helix 34	AD7	B	464	471	Right-handed alpha
Helix 35	AD8	B	472	489	Right-handed alpha
Helix 36	AD9	B	498	508	Right-handed alpha
Helix 37	AE1	B	592	601	Right-handed alpha
Helix 38	AE2	B	602	619	Right-handed alpha
Helix 39	AE3	C	105	112	Right-handed alpha
Helix 40	AE4	C	119	145	Right-handed alpha
Helix 41	AE5	C	193	224	Right-handed alpha
Helix 42	AE6	C	236	247	Right-handed alpha
Helix 43	AE7	C	248	256	Right-handed alpha
Helix 44	AE8	C	257	258	Right-handed 310
Helix 45	AE9	C	259	263	Right-handed 310
Helix 46	AF1	C	276	285	Right-handed 310
Helix 47	AF2	C	286	301	Right-handed alpha
Helix 48	AF3	C	303	335	Right-handed alpha
Helix 49	AF4	C	358	375	Right-handed alpha
Helix 50	AF5	C	385	418	Right-handed alpha
Helix 51	AF6	C	418	438	Right-handed alpha
Helix 52	AF7	C	441	457	Right-handed alpha
Helix 53	AF8	C	464	471	Right-handed alpha
Helix 54	AF9	C	472	489	Right-handed alpha
Helix 55	AG1	C	498	508	Right-handed alpha
Helix 56	AG2	C	592	601	Right-handed alpha
Helix 57	AG3	C	602	619	Right-handed alpha
Helix 58	AG4	D	105	112	Right-handed alpha
Helix 59	AG5	D	119	145	Right-handed alpha
Helix 60	AG6	D	193	224	Right-handed alpha
Helix 61	AG7	D	236	247	Right-handed alpha
Helix 62	AG8	D	248	256	Right-handed alpha
Helix 63	AG9	D	257	258	Right-handed 310
Helix 64	AH1	D	259	263	Right-handed 310
Helix 65	AH2	D	276	285	Right-handed 310
Helix 66	AH3	D	286	301	Right-handed alpha
Helix 67	AH4	D	303	335	Right-handed alpha
Helix 68	AH5	D	358	375	Right-handed alpha
Helix 69	AH6	D	385	418	Right-handed alpha
Helix 70	AH7	D	418	438	Right-handed alpha
Helix 71	AH8	D	441	457	Right-handed alpha
Helix 72	AH9	D	464	471	Right-handed alpha
Helix 73	AI1	D	472	489	Right-handed alpha
Helix 74	AI2	D	498	508	Right-handed alpha
Helix 75	AI3	D	592	601	Right-handed alpha
Helix 76	AI4	D	602	619	Right-handed alpha

There are 20 sheets in PDB entry 6WEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	153	160	anti-parallel
Strand 3	A	185	188	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	232	233	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	273	274	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	514	first strand
Strand 2	A	585	591	anti-parallel
Strand 3	A	529	534	anti-parallel
Strand 4	A	557	558	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	521	first strand
Strand 2	A	578	581	anti-parallel
Strand 3	A	538	541	anti-parallel
Strand 4	A	547	552	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	153	160	anti-parallel
Strand 3	B	185	188	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	229	first strand
Strand 2	B	232	233	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	B	273	274	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	514	first strand
Strand 2	B	585	591	anti-parallel
Strand 3	B	529	534	anti-parallel
Strand 4	B	557	558	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	521	first strand
Strand 2	B	578	581	anti-parallel
Strand 3	B	538	541	anti-parallel
Strand 4	B	547	552	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	171	first strand
Strand 2	C	153	160	anti-parallel
Strand 3	C	185	188	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	229	first strand
Strand 2	C	232	233	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	273	274	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	510	514	first strand
Strand 2	C	585	591	anti-parallel
Strand 3	C	529	534	anti-parallel
Strand 4	C	557	558	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	519	521	first strand
Strand 2	C	578	581	anti-parallel
Strand 3	C	538	541	anti-parallel
Strand 4	C	547	552	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	171	first strand
Strand 2	D	153	160	anti-parallel
Strand 3	D	185	188	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	229	first strand
Strand 2	D	232	233	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	268	first strand
Strand 2	D	273	274	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	510	514	first strand
Strand 2	D	585	591	anti-parallel
Strand 3	D	529	534	anti-parallel
Strand 4	D	557	558	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	519	521	first strand
Strand 2	D	578	581	anti-parallel
Strand 3	D	538	541	anti-parallel
Strand 4	D	547	552	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WEJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WEJ