Analysis of interatomic Contacts of Structural Units in PDB entry:
6WEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WEP entry

There are 2 chains in PDB entry 6WEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3MET 519
B
 GLU 3MET 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6WEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 42Right-handed alpha
Helix 2
AA2
A
56 62Right-handed alpha
Helix 3
AA3
A
93 98Right-handed alpha
Helix 4
AA4
A
114 125Right-handed alpha
Helix 5
AA5
A
194 207Right-handed alpha
Helix 6
AA6
A
211 216Right-handed alpha
Helix 7
AA7
A
220 224Right-handed 310
Helix 8
AA8
A
237 251Right-handed alpha
Helix 9
AA9
A
287 300Right-handed alpha
Helix 10
AB1
A
305 310Right-handed alpha
Helix 11
AB2
A
343 348Right-handed alpha
Helix 12
AB3
A
366 378Right-handed alpha
Helix 13
AB4
A
390 394Right-handed 310
Helix 14
AB5
A
429 450Right-handed alpha
Helix 15
AB6
A
469 477Right-handed alpha
Helix 16
AB7
A
495 499Right-handed 310
Helix 17
AB8
A
500 502Right-handed 310
Helix 18
AB9
B
29 42Right-handed alpha
Helix 19
AC1
B
56 62Right-handed alpha
Helix 20
AC2
B
93 98Right-handed alpha
Helix 21
AC3
B
114 125Right-handed alpha
Helix 22
AC4
B
194 207Right-handed alpha
Helix 23
AC5
B
211 216Right-handed alpha
Helix 24
AC6
B
220 224Right-handed 310
Helix 25
AC7
B
236 251Right-handed alpha
Helix 26
AC8
B
287 300Right-handed alpha
Helix 27
AC9
B
305 310Right-handed alpha
Helix 28
AD1
B
323 328Right-handed alpha
Helix 29
AD2
B
343 348Right-handed alpha
Helix 30
AD3
B
366 378Right-handed alpha
Helix 31
AD4
B
393 397Right-handed 310
Helix 32
AD5
B
429 450Right-handed alpha
Helix 33
AD6
B
469 477Right-handed alpha
Helix 34
AD7
B
495 499Right-handed 310
Helix 35
AD8
B
500 502Right-handed 310
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There are 10 sheets in PDB entry 6WEP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
70 75parallel
Strand 3
A
49 55parallel
Strand 4
A
107 112parallel
Strand 5
A
5 13parallel
Strand 6
A
130 136parallel
Strand 7
A
168 177anti-parallel
Strand 8
A
163 165anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
70 75parallel
Strand 3
A
49 55parallel
Strand 4
A
107 112parallel
Strand 5
A
5 13parallel
Strand 6
A
130 136parallel
Strand 7
A
168 177anti-parallel
Strand 8
A
154 159anti-parallel
Strand 9
A
232 233parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
145 146anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
262 273anti-parallel
Strand 3
A
452 466anti-parallel
Strand 4
A
415 426parallel
Strand 5
A
403 410anti-parallel
Strand 6
A
385 387anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 489first strand
Strand 2
A
504 507anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
70 75parallel
Strand 3
B
49 55parallel
Strand 4
B
107 112parallel
Strand 5
B
5 13parallel
Strand 6
B
130 136parallel
Strand 7
B
168 177anti-parallel
Strand 8
B
163 165anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
70 75parallel
Strand 3
B
49 55parallel
Strand 4
B
107 112parallel
Strand 5
B
5 13parallel
Strand 6
B
130 136parallel
Strand 7
B
168 177anti-parallel
Strand 8
B
154 159anti-parallel
Strand 9
B
232 233parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
145 146anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 254first strand
Strand 2
B
262 273anti-parallel
Strand 3
B
452 466anti-parallel
Strand 4
B
415 426parallel
Strand 5
B
403 410anti-parallel
Strand 6
B
385 387anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 489first strand
Strand 2
B
504 507anti-parallel
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