Analysis of interatomic Contacts of Structural Units in PDB entry:
6WER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WER entry

There are 5 chains in PDB entry 6WER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	LEU 349
B	ASP 1	LEU 349
C	GLU 1	SER 219
D	ASN 1	ARG 215
E	GLU 1	LEU 216

There are 28 helices in PDB entry 6WER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	52	Right-handed alpha
Helix 2	AA2	A	61	82	Right-handed alpha
Helix 3	AA3	A	144	146	Right-handed 310
Helix 4	AA4	A	226	230	Right-handed 310
Helix 5	AA5	A	237	241	Right-handed 310
Helix 6	AA6	A	244	248	Right-handed 310
Helix 7	AA7	A	267	271	Right-handed 310
Helix 8	AA8	A	341	345	Right-handed 310
Helix 9	AA9	B	38	52	Right-handed alpha
Helix 10	AB1	B	61	82	Right-handed alpha
Helix 11	AB2	B	144	146	Right-handed 310
Helix 12	AB3	B	180	183	Right-handed 310
Helix 13	AB4	B	226	230	Right-handed 310
Helix 14	AB5	B	237	241	Right-handed 310
Helix 15	AB6	B	244	248	Right-handed 310
Helix 16	AB7	B	252	256	Right-handed 310
Helix 17	AB8	B	267	271	Right-handed 310
Helix 18	AB9	B	341	345	Right-handed 310
Helix 19	AC1	C	61	64	Right-handed 310
Helix 20	AC2	C	86	90	Right-handed 310
Helix 21	AC3	D	83	87	Right-handed 310
Helix 22	AC4	D	125	131	Right-handed alpha
Helix 23	AC5	D	187	193	Right-handed alpha
Helix 24	AC6	E	61	64	Right-handed 310
Helix 25	AC7	E	86	90	Right-handed 310
Helix 26	AC8	F	83	87	Right-handed 310
Helix 27	AC9	F	125	131	Right-handed alpha
Helix 28	AD1	F	187	193	Right-handed alpha

There are 30 sheets in PDB entry 6WER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	A	12	22	anti-parallel
Strand 3	B	12	22	anti-parallel
Strand 4	B	2	7	anti-parallel
Strand 5	A	2	7	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	36	first strand
Strand 2	A	165	171	parallel
Strand 3	A	153	157	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	131	135	parallel
Strand 3	A	56	57	parallel
Strand 4	A	148	149	parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	331	first strand
Strand 2	A	321	325	anti-parallel
Strand 3	A	273	277	anti-parallel
Strand 4	A	210	217	anti-parallel
Strand 5	A	200	206	anti-parallel
Strand 6	A	192	196	anti-parallel
Strand 7	A	185	189	anti-parallel
Strand 8	B	185	189	anti-parallel
Strand 9	B	192	196	anti-parallel
Strand 10	B	200	206	anti-parallel
Strand 11	B	210	217	anti-parallel
Strand 12	B	273	277	anti-parallel
Strand 13	B	321	325	anti-parallel
Strand 14	B	328	331	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	310	313	parallel
Strand 3	A	335	337	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	36	first strand
Strand 2	B	166	171	parallel
Strand 3	B	153	158	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	90	first strand
Strand 2	B	131	135	parallel
Strand 3	B	56	57	parallel
Strand 4	B	148	149	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	287	first strand
Strand 2	B	310	313	parallel
Strand 3	B	335	337	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	77	81	anti-parallel
Strand 4	C	68	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	142	151	anti-parallel
Strand 3	C	180	189	anti-parallel
Strand 4	C	168	171	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	142	151	anti-parallel
Strand 3	C	180	189	anti-parallel
Strand 4	C	175	177	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	200	205	anti-parallel
Strand 3	C	210	215	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	66	71	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	106	111	parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	37	42	anti-parallel
Strand 5	D	49	53	anti-parallel
Strand 6	D	57	58	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	106	111	parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	101	102	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	34	35	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	133	143	anti-parallel
Strand 3	D	177	186	anti-parallel
Strand 4	D	163	167	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	159	first strand
Strand 2	D	149	154	anti-parallel
Strand 3	D	195	201	anti-parallel
Strand 4	D	209	214	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	77	81	anti-parallel
Strand 4	E	68	72	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	113	117	parallel
Strand 3	E	91	98	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	130	first strand
Strand 2	E	142	151	anti-parallel
Strand 3	E	180	189	anti-parallel
Strand 4	E	168	171	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	130	first strand
Strand 2	E	142	151	anti-parallel
Strand 3	E	180	189	anti-parallel
Strand 4	E	175	177	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	160	first strand
Strand 2	E	200	205	anti-parallel
Strand 3	E	210	215	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	74	79	anti-parallel
Strand 4	F	66	71	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	106	111	parallel
Strand 3	F	89	94	anti-parallel
Strand 4	F	37	42	anti-parallel
Strand 5	F	49	53	anti-parallel
Strand 6	F	57	58	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	106	111	parallel
Strand 3	F	89	94	anti-parallel
Strand 4	F	101	102	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	34	35	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	122	first strand
Strand 2	F	133	143	anti-parallel
Strand 3	F	177	186	anti-parallel
Strand 4	F	163	167	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	159	first strand
Strand 2	F	149	154	anti-parallel
Strand 3	F	195	201	anti-parallel
Strand 4	F	209	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WER

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WER