Analysis of interatomic Contacts of Structural Units in PDB entry:
6WFM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WFM entry

There are 2 chains in PDB entry 6WFM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	PRO 423
B	HIS 0	PRO 423

There are 38 helices in PDB entry 6WFM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	32	Right-handed alpha
Helix 2	AA2	A	33	35	Right-handed 310
Helix 3	AA3	A	47	60	Right-handed alpha
Helix 4	AA4	A	90	95	Right-handed alpha
Helix 5	AA5	A	96	102	Right-handed 310
Helix 6	AA6	A	103	112	Right-handed alpha
Helix 7	AA7	A	129	139	Right-handed alpha
Helix 8	AA8	A	168	180	Right-handed alpha
Helix 9	AA9	A	194	207	Right-handed alpha
Helix 10	AB1	A	237	251	Right-handed alpha
Helix 11	AB2	A	261	264	Right-handed 310
Helix 12	AB3	A	265	275	Right-handed alpha
Helix 13	AB4	A	309	311	Right-handed 310
Helix 14	AB5	A	312	322	Right-handed alpha
Helix 15	AB6	A	340	347	Right-handed alpha
Helix 16	AB7	A	375	387	Right-handed alpha
Helix 17	AB8	A	400	402	Right-handed 310
Helix 18	AB9	A	403	406	Right-handed 310
Helix 19	AC1	A	407	415	Right-handed alpha
Helix 20	AC2	B	21	32	Right-handed alpha
Helix 21	AC3	B	33	35	Right-handed 310
Helix 22	AC4	B	47	60	Right-handed alpha
Helix 23	AC5	B	90	95	Right-handed alpha
Helix 24	AC6	B	96	102	Right-handed 310
Helix 25	AC7	B	103	112	Right-handed alpha
Helix 26	AC8	B	129	138	Right-handed alpha
Helix 27	AC9	B	168	180	Right-handed alpha
Helix 28	AD1	B	194	207	Right-handed alpha
Helix 29	AD2	B	237	251	Right-handed alpha
Helix 30	AD3	B	261	264	Right-handed 310
Helix 31	AD4	B	265	275	Right-handed alpha
Helix 32	AD5	B	309	311	Right-handed 310
Helix 33	AD6	B	312	322	Right-handed alpha
Helix 34	AD7	B	340	347	Right-handed alpha
Helix 35	AD8	B	375	387	Right-handed alpha
Helix 36	AD9	B	400	402	Right-handed 310
Helix 37	AE1	B	403	406	Right-handed 310
Helix 38	AE2	B	407	415	Right-handed alpha

There are 12 sheets in PDB entry 6WFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	373	first strand
Strand 2	A	392	398	parallel
Strand 3	A	1	7	anti-parallel
Strand 4	A	418	422	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	254	258	parallel
Strand 3	A	285	289	anti-parallel
Strand 4	A	278	281	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	39	44	anti-parallel
Strand 4	A	230	233	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	117	first strand
Strand 2	A	149	153	anti-parallel
Strand 3	A	142	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	185	189	parallel
Strand 3	A	219	222	anti-parallel
Strand 4	A	210	212	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	A	326	330	parallel
Strand 3	A	357	361	anti-parallel
Strand 4	A	350	354	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	373	first strand
Strand 2	B	392	398	parallel
Strand 3	B	1	7	anti-parallel
Strand 4	B	418	422	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	254	258	parallel
Strand 3	B	285	289	anti-parallel
Strand 4	B	278	281	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	39	44	anti-parallel
Strand 4	B	230	233	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	149	153	anti-parallel
Strand 3	B	142	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	185	189	parallel
Strand 3	B	219	222	anti-parallel
Strand 4	B	210	212	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	B	326	330	parallel
Strand 3	B	357	361	anti-parallel
Strand 4	B	350	354	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WFM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WFM