Analysis of interatomic Contacts of Structural Units in PDB entry:
6WFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WFV entry

There is 1 chain in PDB entry 6WFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 34GLY 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6WFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 37Right-handed 310
Helix 2
AA2
A
49 62Right-handed alpha
Helix 3
AA3
A
86 98Right-handed alpha
Helix 4
AA4
A
99 101Right-handed 310
Helix 5
AA5
A
121 133Right-handed alpha
Helix 6
AA6
A
147 154Right-handed 310
Helix 7
AA7
A
173 181Right-handed alpha
Helix 8
AA8
A
190 200Right-handed alpha
Helix 9
AA9
A
201 209Right-handed alpha
Helix 10
AB1
A
225 227Right-handed 310
Helix 11
AB2
A
255 265Right-handed 310
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There are 3 sheets in PDB entry 6WFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
39 44parallel
Strand 3
A
107 112parallel
Strand 4
A
163 172anti-parallel
Strand 5
A
136 141anti-parallel
Strand 6
A
210 212parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
251 253anti-parallel
Strand 3
A
219 221parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 234first strand
Strand 2
A
237 242anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il