Analysis of interatomic Contacts of Structural Units in PDB entry:
6WG4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WG4 entry

There are 2 chains in PDB entry 6WG4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 499LEU 674
B
 ALA 500LEU 664
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6WG4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
499 511Right-handed alpha
Helix 2
AA2
A
519 522Right-handed alpha
Helix 3
AA3
A
527 529Right-handed 310
Helix 4
AA4
A
530 539Right-handed alpha
Helix 5
AA5
A
540 543Right-handed 310
Helix 6
AA6
A
549 563Right-handed alpha
Helix 7
AA7
A
582 588Right-handed 310
Helix 8
AA8
A
602 604Right-handed 310
Helix 9
AA9
A
605 614Right-handed alpha
Helix 10
AB1
A
621 631Right-handed alpha
Helix 11
AB2
A
655 664Right-handed alpha
Helix 12
AB3
A
664 669Right-handed alpha
Helix 13
AB4
B
501 523Right-handed alpha
Helix 14
AB5
B
525 531Right-handed alpha
Helix 15
AB6
B
537 540Right-handed 310
Helix 16
AB7
B
543 545Right-handed 310
Helix 17
AB8
B
546 555Right-handed alpha
Helix 18
AB9
B
556 559Right-handed 310
Helix 19
AC1
B
565 579Right-handed alpha
Helix 20
AC2
B
610 613Right-handed 310
Helix 21
AC3
B
616 618Right-handed 310
Helix 22
AC4
B
619 628Right-handed alpha
Helix 23
AC5
B
635 646Right-handed alpha
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There are 4 sheets in PDB entry 6WG4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 518first strand
Strand 2
A
545 547anti-parallel
Strand 3
A
570 572parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 525first strand
Strand 2
A
598 600anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
617 619anti-parallel
Strand 3
A
638 639parallel
Strand 4
A
645 646anti-parallel
Strand 5
A
652 654anti-parallel
Strand 6
B
585 589anti-parallel
Strand 7
B
561 563parallel
Strand 8
B
532 535anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 608first strand
Strand 2
B
630 633anti-parallel
Strand 3
B
649 652parallel
Strand 4
B
657 658anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il