Analysis of interatomic Contacts of Structural Units in PDB entry:
6WGC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WGC entry

There are 11 chains in PDB entry 6WGC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
9	LYS 59	LEU 512
A	SER 404	GLU 907
B	LYS 258	ASN 618
C	ALA 16	GLY 615
E	ASN 2	ASP 476
D	ASP 46	LEU 529
F	SER 271	ALA 430
3	ARG 892	ARG 960
7	PRO 740	VAL 791
G	T 1	T 41
H	A 1	A 41

There are142 helices in PDB entry 6WGC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	9	59	65	Right-handed alpha
Helix 2	AA2	9	84	92	Right-handed alpha
Helix 3	AA3	9	113	129	Right-handed alpha
Helix 4	AA4	9	180	185	Right-handed alpha
Helix 5	AA5	9	186	189	Right-handed 310
Helix 6	AA6	9	194	199	Right-handed alpha
Helix 7	AA7	9	201	207	Right-handed alpha
Helix 8	AA8	9	225	230	Right-handed alpha
Helix 9	AA9	9	237	247	Right-handed alpha
Helix 10	AB1	9	296	303	Right-handed alpha
Helix 11	AB2	9	313	323	Right-handed alpha
Helix 12	AB3	9	337	348	Right-handed alpha
Helix 13	AB4	9	388	399	Right-handed alpha
Helix 14	AB5	9	404	409	Right-handed alpha
Helix 15	AB6	9	411	425	Right-handed alpha
Helix 16	AB7	9	432	445	Right-handed alpha
Helix 17	AB8	9	454	468	Right-handed alpha
Helix 18	AB9	9	495	503	Right-handed alpha
Helix 19	AC1	A	423	430	Right-handed alpha
Helix 20	AC2	A	453	468	Right-handed alpha
Helix 21	AC3	A	484	497	Right-handed alpha
Helix 22	AC4	A	520	522	Right-handed 310
Helix 23	AC5	A	523	531	Right-handed alpha
Helix 24	AC6	A	538	551	Right-handed alpha
Helix 25	AC7	A	569	573	Right-handed 310
Helix 26	AC8	A	576	585	Right-handed alpha
Helix 27	AC9	A	603	608	Right-handed alpha
Helix 28	AD1	A	610	617	Right-handed alpha
Helix 29	AD2	A	628	640	Right-handed alpha
Helix 30	AD3	A	685	700	Right-handed alpha
Helix 31	AD4	A	702	726	Right-handed alpha
Helix 32	AD5	A	774	785	Right-handed alpha
Helix 33	AD6	A	789	796	Right-handed alpha
Helix 34	AD7	A	798	815	Right-handed alpha
Helix 35	AD8	A	822	835	Right-handed alpha
Helix 36	AD9	A	839	849	Right-handed alpha
Helix 37	AE1	A	865	876	Right-handed alpha
Helix 38	AE2	A	897	906	Right-handed alpha
Helix 39	AE3	B	262	266	Right-handed 310
Helix 40	AE4	B	270	282	Right-handed alpha
Helix 41	AE5	B	286	297	Right-handed alpha
Helix 42	AE6	B	300	309	Right-handed alpha
Helix 43	AE7	B	322	331	Right-handed alpha
Helix 44	AE8	B	333	343	Right-handed alpha
Helix 45	AE9	B	371	383	Right-handed alpha
Helix 46	AF1	B	388	393	Right-handed alpha
Helix 47	AF2	B	399	412	Right-handed alpha
Helix 48	AF3	B	434	446	Right-handed alpha
Helix 49	AF4	B	460	464	Right-handed 310
Helix 50	AF5	B	466	474	Right-handed alpha
Helix 51	AF6	B	487	491	Right-handed 310
Helix 52	AF7	B	518	532	Right-handed alpha
Helix 53	AF8	B	556	566	Right-handed alpha
Helix 54	AF9	B	571	585	Right-handed alpha
Helix 55	AG1	B	605	615	Right-handed alpha
Helix 56	AG2	C	56	92	Right-handed alpha
Helix 57	AG3	C	138	157	Right-handed alpha
Helix 58	AG4	C	185	196	Right-handed alpha
Helix 59	AG5	C	212	225	Right-handed alpha
Helix 60	AG6	C	243	251	Right-handed alpha
Helix 61	AG7	C	252	260	Right-handed alpha
Helix 62	AG8	C	276	288	Right-handed alpha
Helix 63	AG9	C	295	307	Right-handed alpha
Helix 64	AH1	C	313	332	Right-handed alpha
Helix 65	AH2	C	333	346	Right-handed 310
Helix 66	AH3	C	347	354	Right-handed alpha
Helix 67	AH4	C	357	371	Right-handed alpha
Helix 68	AH5	C	374	380	Right-handed alpha
Helix 69	AH6	C	385	395	Right-handed alpha
Helix 70	AH7	C	401	416	Right-handed alpha
Helix 71	AH8	C	423	434	Right-handed alpha
Helix 72	AH9	C	436	441	Right-handed alpha
Helix 73	AI1	C	462	466	Right-handed 310
Helix 74	AI2	C	473	480	Right-handed alpha
Helix 75	AI3	C	482	493	Right-handed alpha
Helix 76	AI4	C	510	516	Right-handed alpha
Helix 77	AI5	C	524	530	Right-handed alpha
Helix 78	AI6	C	537	548	Right-handed alpha
Helix 79	AI7	C	549	558	Right-handed alpha
Helix 80	AI8	C	564	571	Right-handed alpha
Helix 81	AI9	C	574	588	Right-handed alpha
Helix 82	AJ1	C	589	592	Right-handed 310
Helix 83	AJ2	E	13	21	Right-handed alpha
Helix 84	AJ3	E	42	53	Right-handed alpha
Helix 85	AJ4	E	63	67	Right-handed 310
Helix 86	AJ5	E	69	87	Right-handed alpha
Helix 87	AJ6	E	104	116	Right-handed alpha
Helix 88	AJ7	E	117	120	Right-handed 310
Helix 89	AJ8	E	151	156	Right-handed alpha
Helix 90	AJ9	E	175	183	Right-handed 310
Helix 91	AK1	E	193	210	Right-handed alpha
Helix 92	AK2	E	212	222	Right-handed alpha
Helix 93	AK3	E	228	244	Right-handed alpha
Helix 94	AK4	E	247	252	Right-handed alpha
Helix 95	AK5	E	255	272	Right-handed alpha
Helix 96	AK6	E	280	288	Right-handed alpha
Helix 97	AK7	E	289	294	Right-handed 310
Helix 98	AK8	E	325	336	Right-handed alpha
Helix 99	AK9	E	337	340	Right-handed 310
Helix 100	AL1	E	345	350	Right-handed alpha
Helix 101	AL2	E	384	393	Right-handed alpha
Helix 102	AL3	E	417	430	Right-handed alpha
Helix 103	AL4	E	455	466	Right-handed alpha
Helix 104	AL5	D	47	62	Right-handed alpha
Helix 105	AL6	D	72	74	Right-handed 310
Helix 106	AL7	D	75	91	Right-handed alpha
Helix 107	AL8	D	107	121	Right-handed alpha
Helix 108	AL9	D	140	158	Right-handed alpha
Helix 109	AM1	D	178	190	Right-handed alpha
Helix 110	AM2	D	228	241	Right-handed alpha
Helix 111	AM3	D	255	260	Right-handed alpha
Helix 112	AM4	D	261	266	Right-handed alpha
Helix 113	AM5	D	280	293	Right-handed alpha
Helix 114	AM6	D	301	315	Right-handed alpha
Helix 115	AM7	D	318	330	Right-handed alpha
Helix 116	AM8	D	333	347	Right-handed alpha
Helix 117	AM9	D	350	361	Right-handed alpha
Helix 118	AN1	D	361	371	Right-handed alpha
Helix 119	AN2	D	376	382	Right-handed alpha
Helix 120	AN3	D	384	399	Right-handed alpha
Helix 121	AN4	D	407	425	Right-handed alpha
Helix 122	AN5	D	455	465	Right-handed alpha
Helix 123	AN6	D	480	489	Right-handed alpha
Helix 124	AN7	D	498	502	Right-handed 310
Helix 125	AN8	D	509	517	Right-handed alpha
Helix 126	AN9	D	523	528	Right-handed alpha
Helix 127	AO1	F	281	291	Right-handed alpha
Helix 128	AO2	F	295	310	Right-handed alpha
Helix 129	AO3	F	315	332	Right-handed alpha
Helix 130	AO4	F	332	337	Right-handed alpha
Helix 131	AO5	F	341	354	Right-handed alpha
Helix 132	AO6	F	359	373	Right-handed alpha
Helix 133	AO7	F	377	387	Right-handed alpha
Helix 134	AO8	F	394	401	Right-handed alpha
Helix 135	AO9	F	414	430	Right-handed alpha
Helix 136	AP1	3	893	906	Right-handed alpha
Helix 137	AP2	3	916	921	Right-handed alpha
Helix 138	AP3	3	936	948	Right-handed alpha
Helix 139	AP4	7	743	755	Right-handed alpha
Helix 140	AP5	7	765	769	Right-handed 310
Helix 141	AP6	7	775	786	Right-handed alpha
Helix 142	AP7	7	787	790	Right-handed 310

There are 17 sheets in PDB entry 6WGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	104	106	first strand
Strand 2	9	284	286	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	169	171	first strand
Strand 2	9	221	223	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	471	475	first strand
Strand 2	9	487	491	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	D	208	209	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	514	first strand
Strand 2	A	562	566	parallel
Strand 3	A	594	598	parallel
Strand 4	A	474	478	parallel
Strand 5	A	622	623	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	657	659	first strand
Strand 2	A	647	650	anti-parallel
Strand 3	A	678	681	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	819	821	first strand
Strand 2	A	891	894	anti-parallel
Strand 3	A	879	881	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	479	first strand
Strand 2	B	314	317	parallel
Strand 3	B	450	455	parallel
Strand 4	B	420	425	parallel
Strand 5	B	360	364	parallel
Strand 6	C	24	25	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	555	first strand
Strand 2	B	599	601	anti-parallel
Strand 3	B	589	591	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	106	first strand
Strand 2	C	232	238	parallel
Strand 3	C	198	205	parallel
Strand 4	C	124	131	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	607	610	anti-parallel
Strand 3	C	597	598	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	126	133	parallel
Strand 3	E	162	170	parallel
Strand 4	E	34	36	parallel
Strand 5	E	186	188	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	433	435	first strand
Strand 2	E	450	452	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	133	first strand
Strand 2	D	211	217	parallel
Strand 3	D	245	246	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	133	first strand
Strand 2	D	211	217	parallel
Strand 3	D	248	251	parallel
Strand 4	D	98	101	parallel
Strand 5	D	272	274	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	471	first strand
Strand 2	D	504	506	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	914	915	first strand
Strand 2	3	958	959	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WGC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WGC