Analysis of interatomic Contacts of Structural Units in PDB entry:
6WGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WGD entry

There are 3 chains in PDB entry 6WGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4LEU 469
B
 THR 5LEU 469
C
 GLN 4ILE 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6WGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 24Right-handed alpha
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
56 60Right-handed 310
Helix 4
AA4
A
63 78Right-handed alpha
Helix 5
AA5
A
88 93Right-handed alpha
Helix 6
AA6
A
102 119Right-handed alpha
Helix 7
AA7
A
133 141Right-handed alpha
Helix 8
AA8
A
142 145Right-handed 310
Helix 9
AA9
A
146 163Right-handed alpha
Helix 10
AB1
A
177 182Right-handed alpha
Helix 11
AB2
A
182 188Right-handed alpha
Helix 12
AB3
A
196 223Right-handed alpha
Helix 13
AB4
A
243 267Right-handed alpha
Helix 14
AB5
A
271 280Right-handed alpha
Helix 15
AB6
A
289 297Right-handed alpha
Helix 16
AB7
A
345 361Right-handed alpha
Helix 17
AB8
A
385 405Right-handed alpha
Helix 18
AB9
A
452 464Right-handed alpha
Helix 19
AC1
B
19 23Right-handed 310
Helix 20
AC2
B
36 40Right-handed 310
Helix 21
AC3
B
56 61Right-handed alpha
Helix 22
AC4
B
63 78Right-handed alpha
Helix 23
AC5
B
88 93Right-handed alpha
Helix 24
AC6
B
102 119Right-handed alpha
Helix 25
AC7
B
133 141Right-handed alpha
Helix 26
AC8
B
142 145Right-handed 310
Helix 27
AC9
B
146 163Right-handed alpha
Helix 28
AD1
B
177 182Right-handed alpha
Helix 29
AD2
B
182 188Right-handed alpha
Helix 30
AD3
B
196 223Right-handed alpha
Helix 31
AD4
B
243 267Right-handed alpha
Helix 32
AD5
B
270 280Right-handed alpha
Helix 33
AD6
B
289 297Right-handed alpha
Helix 34
AD7
B
315 320Right-handed alpha
Helix 35
AD8
B
346 361Right-handed alpha
Helix 36
AD9
B
385 405Right-handed alpha
Helix 37
AE1
B
452 464Right-handed alpha
Helix 38
AE2
C
19 24Right-handed alpha
Helix 39
AE3
C
28 32Right-handed 310
Helix 40
AE4
C
36 40Right-handed 310
Helix 41
AE5
C
63 79Right-handed alpha
Helix 42
AE6
C
88 93Right-handed alpha
Helix 43
AE7
C
102 119Right-handed alpha
Helix 44
AE8
C
133 141Right-handed alpha
Helix 45
AE9
C
142 145Right-handed 310
Helix 46
AF1
C
146 163Right-handed alpha
Helix 47
AF2
C
175 181Right-handed 310
Helix 48
AF3
C
182 188Right-handed alpha
Helix 49
AF4
C
196 223Right-handed alpha
Helix 50
AF5
C
243 267Right-handed alpha
Helix 51
AF6
C
270 280Right-handed alpha
Helix 52
AF7
C
289 297Right-handed alpha
Helix 53
AF8
C
315 320Right-handed alpha
Helix 54
AF9
C
345 361Right-handed alpha
Helix 55
AG1
C
385 405Right-handed alpha
Helix 56
AG2
C
452 464Right-handed alpha
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There are 11 sheets in PDB entry 6WGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
82 86parallel
Strand 3
A
122 128parallel
Strand 4
A
169 173parallel
Strand 5
A
227 233parallel
Strand 6
A
302 305parallel
Strand 7
A
364 368parallel
Strand 8
A
409 415parallel
Strand 9
A
13 17parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
310 312parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
449 451anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
82 86parallel
Strand 3
B
122 128parallel
Strand 4
B
169 173parallel
Strand 5
B
227 233parallel
Strand 6
B
301 305parallel
Strand 7
B
364 368parallel
Strand 8
B
409 415parallel
Strand 9
B
13 17parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
310 312parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 337first strand
Strand 2
B
343 344anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
435 437first strand
Strand 2
B
449 451anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 17first strand
Strand 2
C
82 86parallel
Strand 3
C
122 128parallel
Strand 4
C
169 173parallel
Strand 5
C
227 233parallel
Strand 6
C
301 305parallel
Strand 7
C
364 368parallel
Strand 8
C
409 415parallel
Strand 9
C
13 17parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
237 239first strand
Strand 2
C
310 312parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
336 337first strand
Strand 2
C
343 344anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
435 437first strand
Strand 2
C
449 451anti-parallel
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