Analysis of interatomic Contacts of Structural Units in PDB entry:
6WGJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WGJ entry

There are 8 chains in PDB entry 6WGJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	GLU 224
B	ASP 1	GLU 216
C	GLU 1	GLU 224
D	ASP 1	GLY 215
E	GLU 1	GLU 224
F	ASP 1	GLY 215
G	VAL 2	GLU 224
H	ASP 1	PHE 212

There are 35 helices in PDB entry 6WGJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	30	Right-handed 310
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	74	76	Right-handed 310
Helix 4	AA4	A	87	91	Right-handed 310
Helix 5	AA5	A	168	170	Right-handed 310
Helix 6	AA6	A	199	203	Right-handed 310
Helix 7	AA7	A	213	216	Right-handed 310
Helix 8	AA8	B	84	88	Right-handed 310
Helix 9	AA9	B	126	131	Right-handed alpha
Helix 10	AB1	B	188	193	Right-handed alpha
Helix 11	AB2	C	28	30	Right-handed 310
Helix 12	AB3	C	62	65	Right-handed 310
Helix 13	AB4	C	74	76	Right-handed 310
Helix 14	AB5	C	87	91	Right-handed 310
Helix 15	AB6	C	168	170	Right-handed 310
Helix 16	AB7	C	199	202	Right-handed 310
Helix 17	AB8	C	213	216	Right-handed 310
Helix 18	AB9	D	84	88	Right-handed 310
Helix 19	AC1	D	126	131	Right-handed alpha
Helix 20	AC2	D	188	193	Right-handed alpha
Helix 21	AC3	E	28	30	Right-handed 310
Helix 22	AC4	E	62	65	Right-handed 310
Helix 23	AC5	E	74	76	Right-handed 310
Helix 24	AC6	E	87	91	Right-handed 310
Helix 25	AC7	E	168	170	Right-handed 310
Helix 26	AC8	E	213	215	Right-handed 310
Helix 27	AC9	F	84	88	Right-handed 310
Helix 28	AD1	F	126	131	Right-handed alpha
Helix 29	AD2	G	28	32	Right-handed 310
Helix 30	AD3	G	74	76	Right-handed 310
Helix 31	AD4	G	87	91	Right-handed 310
Helix 32	AD5	G	213	215	Right-handed 310
Helix 33	AD6	H	84	88	Right-handed 310
Helix 34	AD7	H	126	131	Right-handed alpha
Helix 35	AD8	H	188	192	Right-handed alpha

There are 41 sheets in PDB entry 6WGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	119	123	parallel
Strand 3	A	92	101	anti-parallel
Strand 4	A	32	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	147	157	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	175	177	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	147	157	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	181	182	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	166	first strand
Strand 2	A	207	212	anti-parallel
Strand 3	A	217	222	anti-parallel
Strand 4	H	206	212	anti-parallel
Strand 5	H	197	203	anti-parallel
Strand 6	H	150	154	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	75	80	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	107	111	parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	38	43	anti-parallel
Strand 5	B	50	54	anti-parallel
Strand 6	B	58	59	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	107	111	parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	102	103	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	35	36	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	134	144	anti-parallel
Strand 3	B	178	187	anti-parallel
Strand 4	B	164	168	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	150	155	anti-parallel
Strand 3	B	196	203	anti-parallel
Strand 4	B	206	213	anti-parallel
Strand 5	E	217	222	anti-parallel
Strand 6	E	207	212	anti-parallel
Strand 7	E	163	166	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	114	115	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	147	157	anti-parallel
Strand 3	C	188	197	anti-parallel
Strand 4	C	175	177	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	147	157	anti-parallel
Strand 3	C	188	197	anti-parallel
Strand 4	C	181	182	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	166	first strand
Strand 2	C	207	212	anti-parallel
Strand 3	C	217	222	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	75	80	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	107	111	parallel
Strand 3	D	89	95	anti-parallel
Strand 4	D	38	43	anti-parallel
Strand 5	D	49	54	anti-parallel
Strand 6	D	58	59	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	107	111	parallel
Strand 3	D	89	95	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	134	144	anti-parallel
Strand 3	D	178	187	anti-parallel
Strand 4	D	164	168	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	159	first strand
Strand 2	D	150	155	anti-parallel
Strand 3	D	196	203	anti-parallel
Strand 4	D	206	213	anti-parallel
Strand 5	G	217	222	anti-parallel
Strand 6	G	207	212	anti-parallel
Strand 7	G	163	166	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	119	123	parallel
Strand 3	E	92	101	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	136	first strand
Strand 2	E	148	157	anti-parallel
Strand 3	E	188	196	anti-parallel
Strand 4	E	175	177	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	136	first strand
Strand 2	E	148	157	anti-parallel
Strand 3	E	188	196	anti-parallel
Strand 4	E	181	182	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	75	80	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	107	111	parallel
Strand 3	F	89	95	anti-parallel
Strand 4	F	38	43	anti-parallel
Strand 5	F	50	54	anti-parallel
Strand 6	F	58	59	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	107	111	parallel
Strand 3	F	89	95	anti-parallel
Strand 4	F	102	103	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	32	first strand
Strand 2	F	35	36	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	123	first strand
Strand 2	F	134	144	anti-parallel
Strand 3	F	178	187	anti-parallel
Strand 4	F	164	168	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	159	first strand
Strand 2	F	150	155	anti-parallel
Strand 3	F	196	203	anti-parallel
Strand 4	F	206	213	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	119	123	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	136	first strand
Strand 2	G	149	157	anti-parallel
Strand 3	G	188	195	anti-parallel
Strand 4	G	175	177	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	136	first strand
Strand 2	G	149	157	anti-parallel
Strand 3	G	188	195	anti-parallel
Strand 4	G	181	182	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	75	80	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	107	111	parallel
Strand 3	H	89	95	anti-parallel
Strand 4	H	38	43	anti-parallel
Strand 5	H	50	54	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	107	111	parallel
Strand 3	H	89	95	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	32	first strand
Strand 2	H	35	36	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	123	first strand
Strand 2	H	134	144	anti-parallel
Strand 3	H	178	187	anti-parallel
Strand 4	H	164	168	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WGJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WGJ