Analysis of interatomic Contacts of Structural Units in PDB entry:
6WGR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WGR entry

There are 3 chains in PDB entry 6WGR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 22	PHE 281
B	SER 22	PHE 281
C	SER 22	PHE 281

There are 39 helices in PDB entry 6WGR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	34	Right-handed alpha
Helix 2	AA2	A	64	77	Right-handed alpha
Helix 3	AA3	A	78	82	Right-handed 310
Helix 4	AA4	A	89	93	Right-handed 310
Helix 5	AA5	A	99	104	Right-handed 310
Helix 6	AA6	A	110	121	Right-handed alpha
Helix 7	AA7	A	122	134	Right-handed alpha
Helix 8	AA8	A	135	146	Right-handed alpha
Helix 9	AA9	A	158	162	Right-handed 310
Helix 10	AB1	A	173	185	Right-handed alpha
Helix 11	AB2	A	191	205	Right-handed alpha
Helix 12	AB3	A	211	216	Right-handed alpha
Helix 13	AB4	A	266	279	Right-handed alpha
Helix 14	AB5	B	23	35	Right-handed alpha
Helix 15	AB6	B	64	77	Right-handed alpha
Helix 16	AB7	B	78	82	Right-handed 310
Helix 17	AB8	B	89	93	Right-handed 310
Helix 18	AB9	B	99	104	Right-handed 310
Helix 19	AC1	B	110	121	Right-handed alpha
Helix 20	AC2	B	122	134	Right-handed alpha
Helix 21	AC3	B	135	146	Right-handed alpha
Helix 22	AC4	B	158	162	Right-handed 310
Helix 23	AC5	B	173	185	Right-handed alpha
Helix 24	AC6	B	191	205	Right-handed alpha
Helix 25	AC7	B	211	216	Right-handed alpha
Helix 26	AC8	B	266	279	Right-handed alpha
Helix 27	AC9	C	23	35	Right-handed alpha
Helix 28	AD1	C	64	77	Right-handed alpha
Helix 29	AD2	C	78	82	Right-handed 310
Helix 30	AD3	C	89	93	Right-handed 310
Helix 31	AD4	C	99	103	Right-handed 310
Helix 32	AD5	C	110	121	Right-handed alpha
Helix 33	AD6	C	122	134	Right-handed alpha
Helix 34	AD7	C	134	146	Right-handed alpha
Helix 35	AD8	C	158	162	Right-handed 310
Helix 36	AD9	C	173	185	Right-handed alpha
Helix 37	AE1	C	191	205	Right-handed alpha
Helix 38	AE2	C	211	216	Right-handed alpha
Helix 39	AE3	C	267	279	Right-handed alpha

There are 9 sheets in PDB entry 6WGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	53	first strand
Strand 2	A	37	44	anti-parallel
Strand 3	A	250	257	anti-parallel
Strand 4	A	235	243	anti-parallel
Strand 5	A	220	228	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	107	109	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	37	44	anti-parallel
Strand 3	B	250	257	anti-parallel
Strand 4	B	235	243	anti-parallel
Strand 5	B	220	228	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	171	172	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	107	109	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	53	first strand
Strand 2	C	37	44	anti-parallel
Strand 3	C	250	257	anti-parallel
Strand 4	C	235	242	anti-parallel
Strand 5	C	221	228	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	171	172	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	88	first strand
Strand 2	C	106	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WGR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WGR