Analysis of interatomic Contacts of Structural Units in PDB entry:
6WHJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WHJ entry

There are 4 chains in PDB entry 6WHJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	LEU 336
B	SER 3	SER 340
C	THR 4	PHE 339
D	THR 4	SER 337

There are 63 helices in PDB entry 6WHJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	54	Right-handed alpha
Helix 2	AA2	A	56	58	Right-handed 310
Helix 3	AA3	A	69	83	Right-handed alpha
Helix 4	AA4	A	115	121	Right-handed 310
Helix 5	AA5	A	122	126	Right-handed 310
Helix 6	AA6	A	128	134	Right-handed alpha
Helix 7	AA7	A	146	164	Right-handed alpha
Helix 8	AA8	A	181	187	Right-handed alpha
Helix 9	AA9	A	195	204	Right-handed alpha
Helix 10	AB1	A	213	227	Right-handed alpha
Helix 11	AB2	A	239	241	Right-handed 310
Helix 12	AB3	A	269	286	Right-handed alpha
Helix 13	AB4	A	291	297	Right-handed 310
Helix 14	AB5	A	298	317	Right-handed alpha
Helix 15	AB6	A	321	326	Right-handed 310
Helix 16	AB7	A	328	336	Right-handed alpha
Helix 17	AB8	B	41	54	Right-handed alpha
Helix 18	AB9	B	56	58	Right-handed 310
Helix 19	AC1	B	69	83	Right-handed alpha
Helix 20	AC2	B	115	121	Right-handed 310
Helix 21	AC3	B	122	126	Right-handed 310
Helix 22	AC4	B	128	134	Right-handed alpha
Helix 23	AC5	B	146	164	Right-handed alpha
Helix 24	AC6	B	181	187	Right-handed alpha
Helix 25	AC7	B	195	204	Right-handed alpha
Helix 26	AC8	B	213	227	Right-handed alpha
Helix 27	AC9	B	239	241	Right-handed 310
Helix 28	AD1	B	269	286	Right-handed alpha
Helix 29	AD2	B	291	297	Right-handed 310
Helix 30	AD3	B	298	317	Right-handed alpha
Helix 31	AD4	B	328	340	Right-handed alpha
Helix 32	AD5	C	41	54	Right-handed alpha
Helix 33	AD6	C	56	58	Right-handed 310
Helix 34	AD7	C	69	83	Right-handed alpha
Helix 35	AD8	C	115	121	Right-handed 310
Helix 36	AD9	C	122	126	Right-handed 310
Helix 37	AE1	C	128	134	Right-handed alpha
Helix 38	AE2	C	146	164	Right-handed alpha
Helix 39	AE3	C	181	187	Right-handed alpha
Helix 40	AE4	C	195	202	Right-handed alpha
Helix 41	AE5	C	213	227	Right-handed alpha
Helix 42	AE6	C	239	241	Right-handed 310
Helix 43	AE7	C	269	286	Right-handed alpha
Helix 44	AE8	C	291	297	Right-handed 310
Helix 45	AE9	C	298	318	Right-handed alpha
Helix 46	AF1	C	321	325	Right-handed 310
Helix 47	AF2	C	328	339	Right-handed alpha
Helix 48	AF3	D	41	54	Right-handed alpha
Helix 49	AF4	D	56	58	Right-handed 310
Helix 50	AF5	D	69	83	Right-handed alpha
Helix 51	AF6	D	115	121	Right-handed 310
Helix 52	AF7	D	122	126	Right-handed 310
Helix 53	AF8	D	128	134	Right-handed alpha
Helix 54	AF9	D	146	164	Right-handed alpha
Helix 55	AG1	D	181	187	Right-handed alpha
Helix 56	AG2	D	195	202	Right-handed alpha
Helix 57	AG3	D	213	227	Right-handed alpha
Helix 58	AG4	D	239	241	Right-handed 310
Helix 59	AG5	D	266	269	Right-handed 310
Helix 60	AG6	D	270	286	Right-handed alpha
Helix 61	AG7	D	293	297	Right-handed 310
Helix 62	AG8	D	298	316	Right-handed alpha
Helix 63	AG9	D	328	337	Right-handed alpha

There are 12 sheets in PDB entry 6WHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	7	10	parallel
Strand 3	A	138	141	parallel
Strand 4	A	168	171	parallel
Strand 5	A	191	192	parallel
Strand 6	A	233	237	parallel
Strand 7	A	243	247	anti-parallel
Strand 8	A	253	256	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	40	first strand
Strand 2	A	14	21	anti-parallel
Strand 3	A	97	104	parallel
Strand 4	A	109	114	anti-parallel
Strand 5	B	30	32	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	B	109	114	parallel
Strand 3	B	97	103	anti-parallel
Strand 4	B	14	20	parallel
Strand 5	B	34	40	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	89	91	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	7	10	parallel
Strand 3	B	138	141	parallel
Strand 4	B	168	171	parallel
Strand 5	B	191	192	parallel
Strand 6	B	233	237	parallel
Strand 7	B	243	247	anti-parallel
Strand 8	B	253	256	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	89	91	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	7	10	parallel
Strand 3	C	138	141	parallel
Strand 4	C	168	171	parallel
Strand 5	C	191	192	parallel
Strand 6	C	233	237	parallel
Strand 7	C	243	247	anti-parallel
Strand 8	C	253	256	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	40	first strand
Strand 2	C	14	21	anti-parallel
Strand 3	C	97	104	parallel
Strand 4	C	109	114	anti-parallel
Strand 5	D	30	32	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	32	first strand
Strand 2	D	109	114	parallel
Strand 3	D	98	104	anti-parallel
Strand 4	D	14	21	parallel
Strand 5	D	34	40	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	89	91	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	D	7	10	parallel
Strand 3	D	138	141	parallel
Strand 4	D	168	171	parallel
Strand 5	D	191	192	parallel
Strand 6	D	233	237	parallel
Strand 7	D	243	247	anti-parallel
Strand 8	D	253	256	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	67	first strand
Strand 2	D	89	91	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WHJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WHJ