Analysis of interatomic Contacts of Structural Units in PDB entry:
6WHK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WHK entry

There are 3 chains in PDB entry 6WHK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 53GLY 263
C
 GLU 1PRO 227
B
 VAL 3PRO 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6WHK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 67Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
101 109Right-handed alpha
Helix 4
AA4
A
122 127Right-handed alpha
Helix 5
AA5
A
187 196Right-handed alpha
Helix 6
AA6
C
28 32Right-handed 310
Helix 7
AA7
C
53 57Right-handed 310
Helix 8
AA8
C
89 93Right-handed 310
Helix 9
AA9
C
201 203Right-handed 310
Helix 10
AB1
C
215 218Right-handed 310
Helix 11
AB2
B
80 84Right-handed 310
Helix 12
AB3
B
126 132Right-handed alpha
Helix 13
AB4
B
186 193Right-handed alpha
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There are 15 sheets in PDB entry 6WHK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
83 84parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
256 260anti-parallel
Strand 3
A
175 184anti-parallel
Strand 4
A
251 254anti-parallel
Strand 5
A
151 153anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
256 260anti-parallel
Strand 3
A
175 184anti-parallel
Strand 4
A
229 237anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 141first strand
Strand 2
A
144 146anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 169first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
202 205anti-parallel
Strand 4
A
210 213anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
80 85anti-parallel
Strand 4
C
70 75anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
121 125parallel
Strand 3
C
94 101anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
60 62anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 138first strand
Strand 2
C
149 159anti-parallel
Strand 3
C
190 199anti-parallel
Strand 4
C
177 179anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 138first strand
Strand 2
C
149 159anti-parallel
Strand 3
C
190 199anti-parallel
Strand 4
C
183 184anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 168first strand
Strand 2
C
209 214anti-parallel
Strand 3
C
219 224anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
106 110parallel
Strand 3
B
86 93anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 49anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
106 110parallel
Strand 3
B
86 93anti-parallel
Strand 4
B
99 102anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
71 76anti-parallel
Strand 3
B
63 68anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
135 144anti-parallel
Strand 3
B
177 185anti-parallel
Strand 4
B
164 166anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
149 155anti-parallel
Strand 3
B
196 202anti-parallel
Strand 4
B
206 211anti-parallel
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