Analysis of interatomic Contacts of Structural Units in PDB entry:
6WHP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WHP entry

There is 1 chain in PDB entry 6WHP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 88LEU 518
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6WHP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 100Right-handed 310
Helix 2
AA2
A
102 116Right-handed alpha
Helix 3
AA3
A
127 129Right-handed 310
Helix 4
AA4
A
180 184Right-handed 310
Helix 5
AA5
A
202 218Right-handed alpha
Helix 6
AA6
A
243 247Right-handed 310
Helix 7
AA7
A
248 264Right-handed alpha
Helix 8
AA8
A
265 271Right-handed 310
Helix 9
AA9
A
274 278Right-handed 310
Helix 10
AB1
A
280 304Right-handed alpha
Helix 11
AB2
A
304 314Right-handed alpha
Helix 12
AB3
A
315 317Right-handed 310
Helix 13
AB4
A
318 332Right-handed alpha
Helix 14
AB5
A
348 350Right-handed 310
Helix 15
AB6
A
364 367Right-handed 310
Helix 16
AB7
A
381 393Right-handed alpha
Helix 17
AB8
A
414 427Right-handed alpha
Helix 18
AB9
A
441 445Right-handed 310
Helix 19
AC1
A
446 476Right-handed alpha
Helix 20
AC2
A
476 486Right-handed alpha
Helix 21
AC3
A
495 515Right-handed alpha
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There are 4 sheets in PDB entry 6WHP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
223 227parallel
Strand 3
A
230 234anti-parallel
Strand 4
A
188 192anti-parallel
Strand 5
A
143 149anti-parallel
Strand 6
A
131 136anti-parallel
Strand 7
A
159 161parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
352 355anti-parallel
Strand 3
A
369 371anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
378 380anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
437 439anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il