Analysis of interatomic Contacts of Structural Units in PDB entry:
6WHY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WHY entry

There are 4 chains in PDB entry 6WHY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LYS 862
B	GLY 36	GLN 845
C	LYS 25	LYS 862
D	GLY 36	GLY 147

There are112 helices in PDB entry 6WHY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	52	Right-handed alpha
Helix 2	AA2	A	71	82	Right-handed alpha
Helix 3	AA3	A	104	113	Right-handed alpha
Helix 4	AA4	A	146	159	Right-handed alpha
Helix 5	AA5	A	170	187	Right-handed alpha
Helix 6	AA6	A	225	233	Right-handed alpha
Helix 7	AA7	A	247	259	Right-handed alpha
Helix 8	AA8	A	271	280	Right-handed alpha
Helix 9	AA9	A	298	314	Right-handed alpha
Helix 10	AB1	A	337	347	Right-handed alpha
Helix 11	AB2	A	478	492	Right-handed alpha
Helix 12	AB3	A	521	529	Right-handed alpha
Helix 13	AB4	A	542	547	Right-handed 310
Helix 14	AB5	A	580	604	Right-handed alpha
Helix 15	AB6	A	624	635	Right-handed alpha
Helix 16	AB7	A	648	678	Right-handed alpha
Helix 17	AB8	A	690	694	Right-handed 310
Helix 18	AB9	A	710	715	Right-handed alpha
Helix 19	AC1	A	720	731	Right-handed alpha
Helix 20	AC2	A	734	744	Right-handed alpha
Helix 21	AC3	A	754	762	Right-handed alpha
Helix 22	AC4	A	789	803	Right-handed alpha
Helix 23	AC5	A	804	814	Right-handed alpha
Helix 24	AC6	A	830	835	Right-handed alpha
Helix 25	AC7	A	835	861	Right-handed alpha
Helix 26	AC8	B	46	51	Right-handed alpha
Helix 27	AC9	B	52	60	Right-handed alpha
Helix 28	AD1	B	77	92	Right-handed alpha
Helix 29	AD2	B	106	120	Right-handed alpha
Helix 30	AD3	B	128	132	Right-handed 310
Helix 31	AD4	B	149	164	Right-handed alpha
Helix 32	AD5	B	178	189	Right-handed alpha
Helix 33	AD6	B	215	221	Right-handed alpha
Helix 34	AD7	B	233	248	Right-handed alpha
Helix 35	AD8	B	259	263	Right-handed 310
Helix 36	AD9	B	282	287	Right-handed alpha
Helix 37	AE1	B	288	311	Right-handed alpha
Helix 38	AE2	B	325	332	Right-handed 310
Helix 39	AE3	B	336	340	Right-handed 310
Helix 40	AE4	B	460	469	Right-handed alpha
Helix 41	AE5	B	495	500	Right-handed alpha
Helix 42	AE6	B	516	523	Right-handed alpha
Helix 43	AE7	B	546	550	Right-handed 310
Helix 44	AE8	B	557	578	Right-handed alpha
Helix 45	AE9	B	604	614	Right-handed alpha
Helix 46	AF1	B	625	651	Right-handed alpha
Helix 47	AF2	B	652	656	Right-handed 310
Helix 48	AF3	B	668	673	Right-handed alpha
Helix 49	AF4	B	689	691	Right-handed 310
Helix 50	AF5	B	692	697	Right-handed alpha
Helix 51	AF6	B	700	707	Right-handed alpha
Helix 52	AF7	B	715	723	Right-handed alpha
Helix 53	AF8	B	733	740	Right-handed alpha
Helix 54	AF9	B	772	784	Right-handed alpha
Helix 55	AG1	B	787	797	Right-handed alpha
Helix 56	AG2	B	818	844	Right-handed alpha
Helix 57	AG3	C	35	52	Right-handed alpha
Helix 58	AG4	C	71	82	Right-handed alpha
Helix 59	AG5	C	104	113	Right-handed alpha
Helix 60	AG6	C	146	159	Right-handed alpha
Helix 61	AG7	C	170	187	Right-handed alpha
Helix 62	AG8	C	225	233	Right-handed alpha
Helix 63	AG9	C	247	259	Right-handed alpha
Helix 64	AH1	C	271	280	Right-handed alpha
Helix 65	AH2	C	298	314	Right-handed alpha
Helix 66	AH3	C	337	347	Right-handed alpha
Helix 67	AH4	C	478	492	Right-handed alpha
Helix 68	AH5	C	521	529	Right-handed alpha
Helix 69	AH6	C	542	547	Right-handed 310
Helix 70	AH7	C	580	604	Right-handed alpha
Helix 71	AH8	C	624	635	Right-handed alpha
Helix 72	AH9	C	648	678	Right-handed alpha
Helix 73	AI1	C	690	694	Right-handed 310
Helix 74	AI2	C	710	715	Right-handed alpha
Helix 75	AI3	C	720	731	Right-handed alpha
Helix 76	AI4	C	734	744	Right-handed alpha
Helix 77	AI5	C	754	762	Right-handed alpha
Helix 78	AI6	C	789	803	Right-handed alpha
Helix 79	AI7	C	804	814	Right-handed alpha
Helix 80	AI8	C	830	835	Right-handed alpha
Helix 81	AI9	C	835	861	Right-handed alpha
Helix 82	AJ1	D	46	51	Right-handed alpha
Helix 83	AJ2	D	52	60	Right-handed alpha
Helix 84	AJ3	D	77	92	Right-handed alpha
Helix 85	AJ4	D	106	120	Right-handed alpha
Helix 86	AJ5	D	128	132	Right-handed 310
Helix 87	AJ6	D	149	164	Right-handed alpha
Helix 88	AJ7	D	178	189	Right-handed alpha
Helix 89	AJ8	D	215	221	Right-handed alpha
Helix 90	AJ9	D	233	248	Right-handed alpha
Helix 91	AK1	D	259	263	Right-handed 310
Helix 92	AK2	D	282	287	Right-handed alpha
Helix 93	AK3	D	288	311	Right-handed alpha
Helix 94	AK4	D	325	332	Right-handed 310
Helix 95	AK5	D	336	340	Right-handed 310
Helix 96	AK6	D	460	469	Right-handed alpha
Helix 97	AK7	D	495	500	Right-handed alpha
Helix 98	AK8	D	516	523	Right-handed alpha
Helix 99	AK9	D	546	550	Right-handed 310
Helix 100	AL1	D	557	578	Right-handed alpha
Helix 101	AL2	D	604	614	Right-handed alpha
Helix 102	AL3	D	625	651	Right-handed alpha
Helix 103	AL4	D	652	656	Right-handed 310
Helix 104	AL5	D	668	673	Right-handed alpha
Helix 105	AL6	D	689	691	Right-handed 310
Helix 106	AL7	D	692	697	Right-handed alpha
Helix 107	AL8	D	700	707	Right-handed alpha
Helix 108	AL9	D	715	723	Right-handed alpha
Helix 109	AM1	D	733	740	Right-handed alpha
Helix 110	AM2	D	772	784	Right-handed alpha
Helix 111	AM3	D	787	797	Right-handed alpha
Helix 112	AM4	D	818	844	Right-handed alpha

There are 34 sheets in PDB entry 6WHY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	65	first strand
Strand 2	A	27	32	parallel
Strand 3	A	90	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	218	first strand
Strand 2	A	162	168	parallel
Strand 3	A	239	243	parallel
Strand 4	A	267	270	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	371	377	anti-parallel
Strand 3	A	382	389	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	367	368	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	499	first strand
Strand 2	A	421	423	parallel
Strand 3	A	533	538	parallel
Strand 4	A	777	783	anti-parallel
Strand 5	A	549	550	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	499	first strand
Strand 2	A	421	423	parallel
Strand 3	A	533	538	parallel
Strand 4	A	777	783	anti-parallel
Strand 5	A	555	557	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	433	first strand
Strand 2	A	472	477	anti-parallel
Strand 3	A	455	459	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	511	first strand
Strand 2	A	516	519	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	753	first strand
Strand 2	A	559	564	anti-parallel
Strand 3	A	767	769	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	97	99	parallel
Strand 3	B	123	125	parallel
Strand 4	B	144	145	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	204	first strand
Strand 2	B	168	173	parallel
Strand 3	B	228	231	parallel
Strand 4	B	256	258	parallel
Strand 5	B	278	281	parallel
Strand 6	B	362	367	anti-parallel
Strand 7	B	373	379	anti-parallel
Strand 8	B	384	386	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	475	476	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	409	first strand
Strand 2	B	508	509	parallel
Strand 3	B	765	766	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	420	first strand
Strand 2	B	454	459	anti-parallel
Strand 3	B	434	437	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	490	first strand
Strand 2	B	493	494	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	B	728	732	parallel
Strand 3	B	531	539	anti-parallel
Strand 4	B	748	750	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	B	728	732	parallel
Strand 3	B	531	539	anti-parallel
Strand 4	B	757	761	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	65	first strand
Strand 2	C	27	32	parallel
Strand 3	C	90	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	137	139	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	218	first strand
Strand 2	C	162	168	parallel
Strand 3	C	239	243	parallel
Strand 4	C	267	270	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	371	377	anti-parallel
Strand 3	C	382	389	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	367	368	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	499	first strand
Strand 2	C	421	423	parallel
Strand 3	C	533	538	parallel
Strand 4	C	777	783	anti-parallel
Strand 5	C	549	550	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	499	first strand
Strand 2	C	421	423	parallel
Strand 3	C	533	538	parallel
Strand 4	C	777	783	anti-parallel
Strand 5	C	555	557	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	433	first strand
Strand 2	C	472	477	anti-parallel
Strand 3	C	455	459	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	511	first strand
Strand 2	C	516	519	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	750	753	first strand
Strand 2	C	559	564	anti-parallel
Strand 3	C	767	769	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	97	99	parallel
Strand 3	D	123	125	parallel
Strand 4	D	144	145	parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	204	first strand
Strand 2	D	168	173	parallel
Strand 3	D	228	231	parallel
Strand 4	D	256	258	parallel
Strand 5	D	278	281	parallel
Strand 6	D	362	367	anti-parallel
Strand 7	D	373	379	anti-parallel
Strand 8	D	384	386	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	475	476	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	409	first strand
Strand 2	D	508	509	parallel
Strand 3	D	765	766	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	420	first strand
Strand 2	D	454	459	anti-parallel
Strand 3	D	434	437	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	490	first strand
Strand 2	D	493	494	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	683	684	first strand
Strand 2	D	728	732	parallel
Strand 3	D	531	539	anti-parallel
Strand 4	D	748	750	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	683	684	first strand
Strand 2	D	728	732	parallel
Strand 3	D	531	539	anti-parallel
Strand 4	D	757	761	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WHY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WHY