Analysis of interatomic Contacts of Structural Units in PDB entry:
6WI4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WI4 entry

There are 5 chains in PDB entry 6WI4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 142VAL 386
B
 ASP 142VAL 386
C
 LYS 121GLY 127
D
 ASP 384ASP 387
E
 ASP 384ASP 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 6WI4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
164 168Right-handed 310
Helix 2
AA2
A
176 191Right-handed alpha
Helix 3
AA3
A
202 215Right-handed alpha
Helix 4
AA4
A
246 252Right-handed alpha
Helix 5
AA5
A
256 260Right-handed 310
Helix 6
AA6
A
321 334Right-handed alpha
Helix 7
AA7
A
338 351Right-handed alpha
Helix 8
AA8
A
382 386Right-handed 310
Helix 9
AA9
B
164 168Right-handed 310
Helix 10
AB1
B
176 191Right-handed alpha
Helix 11
AB2
B
202 216Right-handed alpha
Helix 12
AB3
B
246 252Right-handed alpha
Helix 13
AB4
B
256 260Right-handed 310
Helix 14
AB5
B
321 334Right-handed alpha
Helix 15
AB6
B
338 351Right-handed alpha
Helix 16
AB7
B
382 386Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 6WI4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
154 159parallel
Strand 3
A
224 229parallel
Strand 4
A
264 269parallel
Strand 5
A
300 304parallel
Strand 6
A
370 373anti-parallel
Strand 7
B
370 373anti-parallel
Strand 8
B
300 304anti-parallel
Strand 9
B
264 269parallel
Strand 10
B
224 229parallel
Strand 11
B
153 159parallel
Strand 12
B
193 199parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
236 239anti-parallel
Strand 3
A
242 245anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
309 310parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
313 315anti-parallel
Strand 3
D
385 386anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
236 239anti-parallel
Strand 3
B
242 245anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 275first strand
Strand 2
B
309 310parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 320first strand
Strand 2
B
313 315anti-parallel
Strand 3
E
385 386anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il