Analysis of interatomic Contacts of Structural Units in PDB entry:
6WI8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WI8 entry

There are 2 chains in PDB entry 6WI8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 15PRO 1102
B
 THR 16PRO 1102
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6WI8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
45 50Right-handed alpha
Helix 3
AA3
A
73 82Right-handed alpha
Helix 4
AA4
A
103 111Right-handed alpha
Helix 5
AA5
A
1010 1015Right-handed 310
Helix 6
AA6
A
1040 1047Right-handed alpha
Helix 7
AA7
A
1064 1067Right-handed 310
Helix 8
AA8
A
1072 1083Right-handed alpha
Helix 9
AA9
A
1085 1099Right-handed alpha
Helix 10
AB1
B
20 26Right-handed alpha
Helix 11
AB2
B
73 80Right-handed alpha
Helix 12
AB3
B
103 111Right-handed alpha
Helix 13
AB4
B
1012 1017Right-handed alpha
Helix 14
AB5
B
1040 1047Right-handed alpha
Helix 15
AB6
B
1064 1067Right-handed 310
Helix 16
AB7
B
1072 1083Right-handed alpha
Helix 17
AB8
B
1085 1099Right-handed alpha
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There are 7 sheets in PDB entry 6WI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
1006 1008anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
61 64anti-parallel
Strand 3
A
100 102anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1017 1018first strand
Strand 2
A
1023 1024anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1037 1039first strand
Strand 2
A
1028 1031anti-parallel
Strand 3
A
1069 1071anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
1005 1008anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
61 64anti-parallel
Strand 3
B
100 102anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1036 1039first strand
Strand 2
B
1028 1031anti-parallel
Strand 3
B
1069 1071anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il