Analysis of interatomic Contacts of Structural Units in PDB entry:
6WI9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WI9 entry

There are 6 chains in PDB entry 6WI9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	LEU 394
B	GLU 3	ASN 340
G	SER 8	ARG 62
N	GLN 1	VAL 126
P	HIS 1	VAL 27
R	ARG 30	LEU 408

There are 31 helices in PDB entry 6WI9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	39	Right-handed alpha
Helix 2	AA2	A	235	240	Right-handed 310
Helix 3	AA3	A	265	278	Right-handed alpha
Helix 4	AA4	A	312	318	Right-handed 310
Helix 5	AA5	A	331	352	Right-handed alpha
Helix 6	AA6	A	372	390	Right-handed alpha
Helix 7	AA7	B	4	25	Right-handed alpha
Helix 8	AA8	B	29	36	Right-handed alpha
Helix 9	AA9	G	10	12	Right-handed 310
Helix 10	AB1	G	13	18	Right-handed alpha
Helix 11	AB2	G	20	25	Right-handed alpha
Helix 12	AB3	G	29	44	Right-handed alpha
Helix 13	AB4	N	28	32	Right-handed 310
Helix 14	AB5	N	87	91	Right-handed 310
Helix 15	AB6	P	2	27	Right-handed alpha
Helix 16	AB7	R	31	46	Right-handed alpha
Helix 17	AB8	R	47	50	Right-handed 310
Helix 18	AB9	R	93	97	Right-handed 310
Helix 19	AC1	R	131	165	Right-handed alpha
Helix 20	AC2	R	172	200	Right-handed alpha
Helix 21	AC3	R	213	246	Right-handed alpha
Helix 22	AC4	R	253	265	Right-handed alpha
Helix 23	AC5	R	265	280	Right-handed alpha
Helix 24	AC6	R	295	325	Right-handed alpha
Helix 25	AC7	R	336	352	Right-handed alpha
Helix 26	AC8	R	353	359	Right-handed 310
Helix 27	AC9	R	362	368	Right-handed 310
Helix 28	AD1	R	369	374	Right-handed alpha
Helix 29	AD2	R	376	378	Right-handed 310
Helix 30	AD3	R	379	390	Right-handed alpha
Helix 31	AD4	R	393	408	Right-handed alpha

There are 12 sheets in PDB entry 6WI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	213	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	40	45	parallel
Strand 4	A	243	246	parallel
Strand 5	A	286	289	parallel
Strand 6	A	359	361	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	317	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	79	83	anti-parallel
Strand 4	B	89	93	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	167	170	anti-parallel
Strand 4	B	176	179	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	208	211	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	93	97	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	46	51	anti-parallel
Strand 6	N	59	60	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	69	70	first strand
Strand 2	R	75	76	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	85	87	first strand
Strand 2	R	103	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WI9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WI9