Analysis of interatomic Contacts of Structural Units in PDB entry:
6WIF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WIF entry

There are 4 chains in PDB entry 6WIF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 28	LYS 382
B	GLY 24	LYS 382
C	THR 26	LYS 382
D	THR 26	HIS 210

There are 76 helices in PDB entry 6WIF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	40	Right-handed alpha
Helix 2	AA2	A	40	47	Right-handed alpha
Helix 3	AA3	A	89	104	Right-handed alpha
Helix 4	AA4	A	112	116	Right-handed 310
Helix 5	AA5	A	117	121	Right-handed 310
Helix 6	AA6	A	123	128	Right-handed 310
Helix 7	AA7	A	129	135	Right-handed alpha
Helix 8	AA8	A	151	161	Right-handed alpha
Helix 9	AA9	A	175	190	Right-handed alpha
Helix 10	AB1	A	193	201	Right-handed alpha
Helix 11	AB2	A	201	206	Right-handed alpha
Helix 12	AB3	A	216	220	Right-handed 310
Helix 13	AB4	A	241	247	Right-handed alpha
Helix 14	AB5	A	251	264	Right-handed alpha
Helix 15	AB6	A	265	268	Right-handed 310
Helix 16	AB7	A	269	279	Right-handed alpha
Helix 17	AB8	A	303	311	Right-handed alpha
Helix 18	AB9	A	312	317	Right-handed alpha
Helix 19	AC1	A	366	381	Right-handed alpha
Helix 20	AC2	B	27	40	Right-handed alpha
Helix 21	AC3	B	41	48	Right-handed alpha
Helix 22	AC4	B	89	104	Right-handed alpha
Helix 23	AC5	B	112	116	Right-handed 310
Helix 24	AC6	B	117	121	Right-handed 310
Helix 25	AC7	B	123	128	Right-handed 310
Helix 26	AC8	B	129	135	Right-handed alpha
Helix 27	AC9	B	151	161	Right-handed alpha
Helix 28	AD1	B	175	190	Right-handed alpha
Helix 29	AD2	B	193	201	Right-handed alpha
Helix 30	AD3	B	201	206	Right-handed alpha
Helix 31	AD4	B	216	223	Right-handed 310
Helix 32	AD5	B	241	247	Right-handed alpha
Helix 33	AD6	B	251	264	Right-handed alpha
Helix 34	AD7	B	265	268	Right-handed 310
Helix 35	AD8	B	269	278	Right-handed alpha
Helix 36	AD9	B	303	311	Right-handed alpha
Helix 37	AE1	B	312	318	Right-handed alpha
Helix 38	AE2	B	366	381	Right-handed alpha
Helix 39	AE3	C	27	40	Right-handed alpha
Helix 40	AE4	C	40	47	Right-handed alpha
Helix 41	AE5	C	89	104	Right-handed alpha
Helix 42	AE6	C	112	116	Right-handed 310
Helix 43	AE7	C	117	121	Right-handed 310
Helix 44	AE8	C	123	128	Right-handed 310
Helix 45	AE9	C	129	135	Right-handed alpha
Helix 46	AF1	C	151	161	Right-handed alpha
Helix 47	AF2	C	175	190	Right-handed alpha
Helix 48	AF3	C	193	201	Right-handed alpha
Helix 49	AF4	C	201	206	Right-handed alpha
Helix 50	AF5	C	216	223	Right-handed 310
Helix 51	AF6	C	242	247	Right-handed alpha
Helix 52	AF7	C	251	264	Right-handed alpha
Helix 53	AF8	C	265	268	Right-handed 310
Helix 54	AF9	C	269	278	Right-handed alpha
Helix 55	AG1	C	303	310	Right-handed alpha
Helix 56	AG2	C	312	318	Right-handed alpha
Helix 57	AG3	C	366	381	Right-handed alpha
Helix 58	AG4	D	28	40	Right-handed alpha
Helix 59	AG5	D	40	48	Right-handed alpha
Helix 60	AG6	D	89	104	Right-handed alpha
Helix 61	AG7	D	112	116	Right-handed 310
Helix 62	AG8	D	117	121	Right-handed 310
Helix 63	AG9	D	123	128	Right-handed 310
Helix 64	AH1	D	129	135	Right-handed alpha
Helix 65	AH2	D	151	161	Right-handed alpha
Helix 66	AH3	D	175	190	Right-handed alpha
Helix 67	AH4	D	193	201	Right-handed alpha
Helix 68	AH5	D	201	206	Right-handed alpha
Helix 69	AH6	D	216	223	Right-handed 310
Helix 70	AH7	D	242	247	Right-handed alpha
Helix 71	AH8	D	251	264	Right-handed alpha
Helix 72	AH9	D	265	268	Right-handed 310
Helix 73	AI1	D	269	278	Right-handed alpha
Helix 74	AI2	D	303	310	Right-handed alpha
Helix 75	AI3	D	312	318	Right-handed alpha
Helix 76	AI4	D	366	382	Right-handed alpha

There are 16 sheets in PDB entry 6WIF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	61	71	anti-parallel
Strand 3	A	51	58	anti-parallel
Strand 4	A	355	361	anti-parallel
Strand 5	A	343	350	anti-parallel
Strand 6	A	332	340	anti-parallel
Strand 7	A	296	299	anti-parallel
Strand 8	A	289	291	anti-parallel
Strand 9	A	284	286	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	249	250	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	320	321	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	233	234	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	61	71	anti-parallel
Strand 3	B	51	58	anti-parallel
Strand 4	B	355	361	anti-parallel
Strand 5	B	344	350	anti-parallel
Strand 6	B	332	339	anti-parallel
Strand 7	B	296	299	anti-parallel
Strand 8	B	289	291	anti-parallel
Strand 9	B	284	286	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	249	250	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	320	321	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	233	234	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	61	71	anti-parallel
Strand 3	C	51	58	anti-parallel
Strand 4	C	355	361	anti-parallel
Strand 5	C	344	350	anti-parallel
Strand 6	C	332	339	anti-parallel
Strand 7	C	296	299	anti-parallel
Strand 8	C	289	291	anti-parallel
Strand 9	C	284	286	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	249	250	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	320	321	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	233	234	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	61	71	anti-parallel
Strand 3	D	51	58	anti-parallel
Strand 4	D	355	361	anti-parallel
Strand 5	D	344	350	anti-parallel
Strand 6	D	332	339	anti-parallel
Strand 7	D	296	299	anti-parallel
Strand 8	D	289	291	anti-parallel
Strand 9	D	284	286	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	249	250	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	320	321	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	233	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WIF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WIF