Analysis of interatomic Contacts of Structural Units in PDB entry:
6WIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WIM entry

There is 1 chain in PDB entry 6WIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1PHE 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 6WIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 33Right-handed alpha
Helix 2
AA2
A
68 77Right-handed alpha
Helix 3
AA3
A
78 80Right-handed 310
Helix 4
AA4
A
85 103Right-handed alpha
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
142 150Right-handed alpha
Helix 7
AA7
A
159 172Right-handed alpha
Helix 8
AA8
A
486 488Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 6WIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
82 84anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
121 127parallel
Strand 3
A
109 112anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
190 196parallel
Strand 3
A
179 184anti-parallel
Back to list of sheets
Back to top of page

There are 18 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
313 330anti-parallel
Strand 3
A
340 355anti-parallel
Strand 4
A
358 369anti-parallel
Strand 5
A
391 402anti-parallel
Strand 6
A
407 417anti-parallel
Strand 7
A
449 462anti-parallel
Strand 8
A
468 481anti-parallel
Strand 9
A
490 504anti-parallel
Strand 10
A
507 518anti-parallel
Strand 11
A
529 537anti-parallel
Strand 12
A
203 210anti-parallel
Strand 13
A
221 229anti-parallel
Strand 14
A
237 245anti-parallel
Strand 15
A
252 265anti-parallel
Strand 16
A
268 283anti-parallel
Strand 17
A
290 310anti-parallel
Strand 18
A
313 330anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
445 446anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il