Analysis of interatomic Contacts of Structural Units in PDB entry:
6WIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WIP entry

There is 1 chain in PDB entry 6WIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 29ARG 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6WIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 46Right-handed alpha
Helix 2
AA2
A
75 88Right-handed alpha
Helix 3
AA3
A
89 94Right-handed alpha
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
110 114Right-handed 310
Helix 6
AA6
A
121 132Right-handed alpha
Helix 7
AA7
A
133 144Right-handed alpha
Helix 8
AA8
A
145 157Right-handed alpha
Helix 9
AA9
A
169 173Right-handed 310
Helix 10
AB1
A
184 197Right-handed alpha
Helix 11
AB2
A
202 216Right-handed alpha
Helix 12
AB3
A
222 227Right-handed alpha
Helix 13
AB4
A
275 290Right-handed alpha
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There are 3 sheets in PDB entry 6WIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
48 55anti-parallel
Strand 3
A
259 266anti-parallel
Strand 4
A
244 252anti-parallel
Strand 5
A
232 240anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
182 183anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
119 120anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il