Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WJ2 entry

There are 8 chains in PDB entry 6WJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 49	PHE 158
B	ALA 0	ALA 123
C	ASP 3	VAL 121
D	SER 3	PRO 96
E	GLY 81	MET 171
F	MET 6	GLU 301
G	PRO 62	VAL 369
H	PRO 39	VAL 97

There are 36 helices in PDB entry 6WJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	65	Right-handed alpha
Helix 2	AA2	A	84	97	Right-handed alpha
Helix 3	AA3	A	114	119	Right-handed alpha
Helix 4	AA4	A	126	144	Right-handed alpha
Helix 5	AA5	B	3	13	Right-handed alpha
Helix 6	AA6	B	43	59	Right-handed alpha
Helix 7	AA7	B	102	123	Right-handed alpha
Helix 8	AA8	C	6	13	Right-handed alpha
Helix 9	AA9	C	14	16	Right-handed 310
Helix 10	AB1	C	48	60	Right-handed alpha
Helix 11	AB2	C	99	110	Right-handed alpha
Helix 12	AB3	C	110	121	Right-handed alpha
Helix 13	AB4	D	4	12	Right-handed alpha
Helix 14	AB5	D	30	34	Right-handed 310
Helix 15	AB6	D	36	51	Right-handed alpha
Helix 16	AB7	E	84	95	Right-handed alpha
Helix 17	AB8	E	123	138	Right-handed alpha
Helix 18	AB9	F	21	29	Right-handed alpha
Helix 19	AC1	F	67	79	Right-handed alpha
Helix 20	AC2	F	99	116	Right-handed alpha
Helix 21	AC3	F	136	152	Right-handed alpha
Helix 22	AC4	F	167	179	Right-handed alpha
Helix 23	AC5	F	184	199	Right-handed alpha
Helix 24	AC6	F	227	243	Right-handed alpha
Helix 25	AC7	F	244	246	Right-handed 310
Helix 26	AC8	F	283	298	Right-handed alpha
Helix 27	AC9	G	76	83	Right-handed alpha
Helix 28	AD1	G	86	91	Right-handed 310
Helix 29	AD2	G	130	135	Right-handed alpha
Helix 30	AD3	G	150	168	Right-handed alpha
Helix 31	AD4	G	184	205	Right-handed alpha
Helix 32	AD5	G	223	235	Right-handed alpha
Helix 33	AD6	G	239	255	Right-handed alpha
Helix 34	AD7	G	280	300	Right-handed alpha
Helix 35	AD8	G	348	369	Right-handed alpha
Helix 36	AD9	H	60	73	Right-handed alpha

There are 6 sheets in PDB entry 6WJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	B	1	2	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	36	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	90	96	anti-parallel
Strand 4	B	79	84	anti-parallel
Strand 5	B	69	76	anti-parallel
Strand 6	C	68	75	anti-parallel
Strand 7	C	78	84	anti-parallel
Strand 8	C	89	95	anti-parallel
Strand 9	C	19	25	anti-parallel
Strand 10	C	35	36	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	15	22	anti-parallel
Strand 3	D	83	89	anti-parallel
Strand 4	D	74	80	anti-parallel
Strand 5	D	65	69	anti-parallel
Strand 6	E	146	148	anti-parallel
Strand 7	E	156	160	anti-parallel
Strand 8	E	165	170	anti-parallel
Strand 9	E	100	106	anti-parallel
Strand 10	E	112	116	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	52	first strand
Strand 2	F	56	61	anti-parallel
Strand 3	F	9	13	parallel
Strand 4	F	85	93	parallel
Strand 5	F	123	127	parallel
Strand 6	F	159	161	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	217	first strand
Strand 2	F	202	207	anti-parallel
Strand 3	F	270	276	anti-parallel
Strand 4	F	260	267	anti-parallel
Strand 5	F	249	255	anti-parallel
Strand 6	G	315	320	anti-parallel
Strand 7	G	325	330	anti-parallel
Strand 8	G	335	341	anti-parallel
Strand 9	G	258	263	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	103	first strand
Strand 2	G	113	116	anti-parallel
Strand 3	G	63	67	parallel
Strand 4	G	139	145	parallel
Strand 5	G	172	178	parallel
Strand 6	G	214	217	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJ2