Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WJ3 entry

There are 8 chains in PDB entry 6WJ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 49	PHE 158
B	ALA 0	ALA 123
C	ASP 3	VAL 121
D	SER 3	PRO 96
E	GLY 81	MET 171
F	MET 6	GLU 301
G	PRO 62	VAL 369
H	PRO 39	VAL 97

There are 40 helices in PDB entry 6WJ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	65	Right-handed alpha
Helix 2	AA2	A	84	97	Right-handed alpha
Helix 3	AA3	A	114	119	Right-handed alpha
Helix 4	AA4	A	126	144	Right-handed alpha
Helix 5	AA5	B	3	13	Right-handed alpha
Helix 6	AA6	B	43	59	Right-handed alpha
Helix 7	AA7	B	102	123	Right-handed alpha
Helix 8	AA8	C	6	13	Right-handed alpha
Helix 9	AA9	C	14	16	Right-handed 310
Helix 10	AB1	C	41	45	Right-handed 310
Helix 11	AB2	C	47	61	Right-handed alpha
Helix 12	AB3	C	99	110	Right-handed alpha
Helix 13	AB4	C	110	121	Right-handed alpha
Helix 14	AB5	D	4	11	Right-handed alpha
Helix 15	AB6	D	30	34	Right-handed 310
Helix 16	AB7	D	36	52	Right-handed alpha
Helix 17	AB8	E	84	94	Right-handed alpha
Helix 18	AB9	E	123	138	Right-handed alpha
Helix 19	AC1	F	21	29	Right-handed alpha
Helix 20	AC2	F	69	79	Right-handed alpha
Helix 21	AC3	F	99	116	Right-handed alpha
Helix 22	AC4	F	136	152	Right-handed alpha
Helix 23	AC5	F	167	181	Right-handed alpha
Helix 24	AC6	F	184	198	Right-handed alpha
Helix 25	AC7	F	224	226	Right-handed 310
Helix 26	AC8	F	227	243	Right-handed alpha
Helix 27	AC9	F	244	246	Right-handed 310
Helix 28	AD1	F	283	301	Right-handed alpha
Helix 29	AD2	G	76	82	Right-handed alpha
Helix 30	AD3	G	88	93	Right-handed 310
Helix 31	AD4	G	130	136	Right-handed alpha
Helix 32	AD5	G	150	168	Right-handed alpha
Helix 33	AD6	G	184	205	Right-handed alpha
Helix 34	AD7	G	223	235	Right-handed alpha
Helix 35	AD8	G	239	255	Right-handed alpha
Helix 36	AD9	G	281	300	Right-handed alpha
Helix 37	AE1	G	343	347	Right-handed 310
Helix 38	AE2	G	348	369	Right-handed alpha
Helix 39	AE3	H	60	74	Right-handed alpha
Helix 40	AE4	H	91	95	Right-handed 310

There are 8 sheets in PDB entry 6WJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	B	1	2	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	36	first strand
Strand 2	B	21	25	anti-parallel
Strand 3	B	90	96	anti-parallel
Strand 4	B	79	84	anti-parallel
Strand 5	B	69	76	anti-parallel
Strand 6	C	68	75	anti-parallel
Strand 7	C	78	84	anti-parallel
Strand 8	C	89	95	anti-parallel
Strand 9	C	21	25	anti-parallel
Strand 10	C	35	36	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	18	22	anti-parallel
Strand 3	D	83	90	anti-parallel
Strand 4	D	73	80	anti-parallel
Strand 5	D	66	69	anti-parallel
Strand 6	E	146	148	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	116	first strand
Strand 2	E	102	106	anti-parallel
Strand 3	E	165	169	anti-parallel
Strand 4	E	156	160	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	52	first strand
Strand 2	F	56	61	anti-parallel
Strand 3	F	9	13	parallel
Strand 4	F	85	93	parallel
Strand 5	F	123	127	parallel
Strand 6	F	159	161	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	204	first strand
Strand 2	F	270	275	anti-parallel
Strand 3	F	260	267	anti-parallel
Strand 4	F	253	256	anti-parallel
Strand 5	G	314	316	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	113	114	first strand
Strand 2	G	63	67	parallel
Strand 3	G	139	145	parallel
Strand 4	G	172	178	parallel
Strand 5	G	214	217	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	258	263	first strand
Strand 2	G	335	341	anti-parallel
Strand 3	G	325	327	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WJ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJ3