Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WJ5 entry

There are 4 chains in PDB entry 6WJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 448	THR 1078
B	SER 448	THR 1078
C	SER 448	THR 1078
D	SER 448	THR 1078

There are130 helices in PDB entry 6WJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	448	456	Right-handed alpha
Helix 2	AA2	A	458	466	Right-handed alpha
Helix 3	AA3	A	484	493	Right-handed alpha
Helix 4	AA4	A	494	505	Right-handed alpha
Helix 5	AA5	A	516	524	Right-handed alpha
Helix 6	AA6	A	526	538	Right-handed alpha
Helix 7	AA7	A	539	541	Right-handed 310
Helix 8	AA8	A	550	558	Right-handed alpha
Helix 9	AA9	A	560	570	Right-handed alpha
Helix 10	AB1	A	582	589	Right-handed alpha
Helix 11	AB2	A	592	602	Right-handed alpha
Helix 12	AB3	A	604	609	Right-handed alpha
Helix 13	AB4	A	621	630	Right-handed alpha
Helix 14	AB5	A	630	641	Right-handed alpha
Helix 15	AB6	A	684	692	Right-handed alpha
Helix 16	AB7	A	694	699	Right-handed alpha
Helix 17	AB8	A	700	714	Right-handed alpha
Helix 18	AB9	A	714	739	Right-handed alpha
Helix 19	AC1	A	766	788	Right-handed alpha
Helix 20	AC2	A	804	816	Right-handed alpha
Helix 21	AC3	A	819	823	Right-handed 310
Helix 22	AC4	A	827	845	Right-handed alpha
Helix 23	AC5	A	846	851	Right-handed alpha
Helix 24	AC6	A	856	892	Right-handed alpha
Helix 25	AC7	A	895	899	Right-handed 310
Helix 26	AC8	A	900	911	Right-handed alpha
Helix 27	AC9	A	912	914	Right-handed 310
Helix 28	AD1	A	917	922	Right-handed alpha
Helix 29	AD2	A	922	927	Right-handed alpha
Helix 30	AD3	A	933	948	Right-handed alpha
Helix 31	AD4	A	950	988	Right-handed alpha
Helix 32	AD5	A	991	999	Right-handed alpha
Helix 33	AD6	A	1040	1072	Right-handed alpha
Helix 34	AD7	B	449	456	Right-handed alpha
Helix 35	AD8	B	458	466	Right-handed alpha
Helix 36	AD9	B	484	492	Right-handed alpha
Helix 37	AE1	B	494	505	Right-handed alpha
Helix 38	AE2	B	516	525	Right-handed alpha
Helix 39	AE3	B	526	538	Right-handed alpha
Helix 40	AE4	B	550	558	Right-handed alpha
Helix 41	AE5	B	560	570	Right-handed alpha
Helix 42	AE6	B	582	589	Right-handed alpha
Helix 43	AE7	B	592	602	Right-handed alpha
Helix 44	AE8	B	604	609	Right-handed alpha
Helix 45	AE9	B	621	630	Right-handed alpha
Helix 46	AF1	B	630	641	Right-handed alpha
Helix 47	AF2	B	684	692	Right-handed alpha
Helix 48	AF3	B	694	699	Right-handed alpha
Helix 49	AF4	B	700	714	Right-handed alpha
Helix 50	AF5	B	714	739	Right-handed alpha
Helix 51	AF6	B	766	788	Right-handed alpha
Helix 52	AF7	B	804	816	Right-handed alpha
Helix 53	AF8	B	819	823	Right-handed 310
Helix 54	AF9	B	827	845	Right-handed alpha
Helix 55	AG1	B	846	851	Right-handed alpha
Helix 56	AG2	B	853	892	Right-handed alpha
Helix 57	AG3	B	895	899	Right-handed 310
Helix 58	AG4	B	900	912	Right-handed alpha
Helix 59	AG5	B	917	922	Right-handed alpha
Helix 60	AG6	B	922	927	Right-handed alpha
Helix 61	AG7	B	933	948	Right-handed alpha
Helix 62	AG8	B	950	990	Right-handed alpha
Helix 63	AG9	B	991	999	Right-handed alpha
Helix 64	AH1	B	1040	1072	Right-handed alpha
Helix 65	AH2	C	449	456	Right-handed alpha
Helix 66	AH3	C	458	466	Right-handed alpha
Helix 67	AH4	C	484	492	Right-handed alpha
Helix 68	AH5	C	494	505	Right-handed alpha
Helix 69	AH6	C	516	524	Right-handed alpha
Helix 70	AH7	C	526	534	Right-handed alpha
Helix 71	AH8	C	535	536	Right-handed 310
Helix 72	AH9	C	537	541	Right-handed 310
Helix 73	AI1	C	550	558	Right-handed alpha
Helix 74	AI2	C	560	570	Right-handed alpha
Helix 75	AI3	C	582	589	Right-handed alpha
Helix 76	AI4	C	592	602	Right-handed alpha
Helix 77	AI5	C	604	609	Right-handed alpha
Helix 78	AI6	C	621	630	Right-handed alpha
Helix 79	AI7	C	630	641	Right-handed alpha
Helix 80	AI8	C	684	692	Right-handed alpha
Helix 81	AI9	C	694	699	Right-handed alpha
Helix 82	AJ1	C	700	714	Right-handed alpha
Helix 83	AJ2	C	714	739	Right-handed alpha
Helix 84	AJ3	C	766	788	Right-handed alpha
Helix 85	AJ4	C	804	816	Right-handed alpha
Helix 86	AJ5	C	819	823	Right-handed 310
Helix 87	AJ6	C	827	851	Right-handed alpha
Helix 88	AJ7	C	856	892	Right-handed alpha
Helix 89	AJ8	C	895	899	Right-handed 310
Helix 90	AJ9	C	900	912	Right-handed alpha
Helix 91	AK1	C	917	922	Right-handed alpha
Helix 92	AK2	C	922	927	Right-handed alpha
Helix 93	AK3	C	933	948	Right-handed alpha
Helix 94	AK4	C	950	968	Right-handed alpha
Helix 95	AK5	C	970	990	Right-handed alpha
Helix 96	AK6	C	991	999	Right-handed alpha
Helix 97	AK7	C	1040	1072	Right-handed alpha
Helix 98	AK8	D	449	456	Right-handed alpha
Helix 99	AK9	D	458	466	Right-handed alpha
Helix 100	AL1	D	484	492	Right-handed alpha
Helix 101	AL2	D	494	505	Right-handed alpha
Helix 102	AL3	D	516	524	Right-handed alpha
Helix 103	AL4	D	526	535	Right-handed alpha
Helix 104	AL5	D	537	543	Right-handed 310
Helix 105	AL6	D	550	558	Right-handed alpha
Helix 106	AL7	D	560	570	Right-handed alpha
Helix 107	AL8	D	582	589	Right-handed alpha
Helix 108	AL9	D	592	602	Right-handed alpha
Helix 109	AM1	D	604	609	Right-handed alpha
Helix 110	AM2	D	621	630	Right-handed alpha
Helix 111	AM3	D	630	640	Right-handed alpha
Helix 112	AM4	D	684	692	Right-handed alpha
Helix 113	AM5	D	694	699	Right-handed alpha
Helix 114	AM6	D	700	714	Right-handed alpha
Helix 115	AM7	D	714	739	Right-handed alpha
Helix 116	AM8	D	766	788	Right-handed alpha
Helix 117	AM9	D	804	816	Right-handed alpha
Helix 118	AN1	D	819	823	Right-handed 310
Helix 119	AN2	D	827	845	Right-handed alpha
Helix 120	AN3	D	846	851	Right-handed alpha
Helix 121	AN4	D	856	892	Right-handed alpha
Helix 122	AN5	D	895	899	Right-handed 310
Helix 123	AN6	D	900	911	Right-handed alpha
Helix 124	AN7	D	912	914	Right-handed 310
Helix 125	AN8	D	917	922	Right-handed alpha
Helix 126	AN9	D	922	927	Right-handed alpha
Helix 127	AO1	D	933	948	Right-handed alpha
Helix 128	AO2	D	950	990	Right-handed alpha
Helix 129	AO3	D	991	999	Right-handed alpha
Helix 130	AO4	D	1040	1072	Right-handed alpha

There are 8 sheets in PDB entry 6WJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	656	659	anti-parallel
Strand 3	A	1002	1005	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	746	747	first strand
Strand 2	A	750	751	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	644	first strand
Strand 2	B	656	659	anti-parallel
Strand 3	B	1002	1005	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	746	747	first strand
Strand 2	B	750	751	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	656	659	anti-parallel
Strand 3	C	1002	1005	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	746	747	first strand
Strand 2	C	750	751	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	642	644	first strand
Strand 2	D	656	659	anti-parallel
Strand 3	D	1002	1005	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	746	747	first strand
Strand 2	D	750	751	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJ5