Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WJ6 entry

There are 13 chains in PDB entry 6WJ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 11	ASN 335
B	GLY 2	PHE 479
C	SER 18	ASP 460
D	GLU 11	LEU 352
E	PRO 9	ASN 80
F	PRO 13	ARG 44
H	ALA 2	GLY 64
I	LEU 2	ASP 36
K	LYS 9	GLY 43
L	ARG 9	ASN 39
M	GLN 2	GLY 30
T	GLU 2	GLU 30
X	MET 1	LYS 35

There are 94 helices in PDB entry 6WJ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	33	55	Right-handed alpha
Helix 3	AA3	A	70	74	Right-handed 310
Helix 4	AA4	A	95	99	Right-handed 310
Helix 5	AA5	A	101	108	Right-handed alpha
Helix 6	AA6	A	109	137	Right-handed alpha
Helix 7	AA7	A	142	147	Right-handed alpha
Helix 8	AA8	A	147	159	Right-handed alpha
Helix 9	AA9	A	159	166	Right-handed alpha
Helix 10	AB1	A	167	171	Right-handed 310
Helix 11	AB2	A	176	191	Right-handed alpha
Helix 12	AB3	A	192	194	Right-handed 310
Helix 13	AB4	A	195	222	Right-handed alpha
Helix 14	AB5	A	249	259	Right-handed alpha
Helix 15	AB6	A	267	294	Right-handed alpha
Helix 16	AB7	A	316	331	Right-handed alpha
Helix 17	AB8	B	4	13	Right-handed 310
Helix 18	AB9	B	15	45	Right-handed alpha
Helix 19	AC1	B	54	59	Right-handed 310
Helix 20	AC2	B	62	69	Right-handed alpha
Helix 21	AC3	B	92	117	Right-handed alpha
Helix 22	AC4	B	134	157	Right-handed alpha
Helix 23	AC5	B	186	191	Right-handed 310
Helix 24	AC6	B	194	219	Right-handed alpha
Helix 25	AC7	B	222	229	Right-handed alpha
Helix 26	AC8	B	234	259	Right-handed alpha
Helix 27	AC9	B	264	269	Right-handed alpha
Helix 28	AD1	B	271	277	Right-handed alpha
Helix 29	AD2	B	278	293	Right-handed alpha
Helix 30	AD3	B	297	303	Right-handed alpha
Helix 31	AD4	B	306	313	Right-handed alpha
Helix 32	AD5	B	314	318	Right-handed 310
Helix 33	AD6	B	329	333	Right-handed 310
Helix 34	AD7	B	413	425	Right-handed alpha
Helix 35	AD8	B	446	475	Right-handed alpha
Helix 36	AD9	C	21	30	Right-handed 310
Helix 37	AE1	C	32	61	Right-handed alpha
Helix 38	AE2	C	67	72	Right-handed 310
Helix 39	AE3	C	75	82	Right-handed alpha
Helix 40	AE4	C	95	122	Right-handed alpha
Helix 41	AE5	C	140	169	Right-handed alpha
Helix 42	AE6	C	192	197	Right-handed alpha
Helix 43	AE7	C	198	202	Right-handed 310
Helix 44	AE8	C	216	240	Right-handed alpha
Helix 45	AE9	C	244	251	Right-handed alpha
Helix 46	AF1	C	254	280	Right-handed alpha
Helix 47	AF2	C	285	290	Right-handed alpha
Helix 48	AF3	C	292	309	Right-handed alpha
Helix 49	AF4	C	340	346	Right-handed 310
Helix 50	AF5	C	365	370	Right-handed alpha
Helix 51	AF6	C	372	382	Right-handed alpha
Helix 52	AF7	C	383	386	Right-handed 310
Helix 53	AF8	C	408	441	Right-handed alpha
Helix 54	AF9	C	451	456	Right-handed alpha
Helix 55	AG1	D	13	23	Right-handed alpha
Helix 56	AG2	D	33	54	Right-handed alpha
Helix 57	AG3	D	82	86	Right-handed 310
Helix 58	AG4	D	100	107	Right-handed alpha
Helix 59	AG5	D	109	137	Right-handed alpha
Helix 60	AG6	D	140	158	Right-handed alpha
Helix 61	AG7	D	158	164	Right-handed alpha
Helix 62	AG8	D	166	170	Right-handed 310
Helix 63	AG9	D	175	188	Right-handed alpha
Helix 64	AH1	D	190	193	Right-handed 310
Helix 65	AH2	D	194	221	Right-handed alpha
Helix 66	AH3	D	230	234	Right-handed 310
Helix 67	AH4	D	245	257	Right-handed alpha
Helix 68	AH5	D	263	291	Right-handed alpha
Helix 69	AH6	D	298	308	Right-handed alpha
Helix 70	AH7	D	313	334	Right-handed alpha
Helix 71	AH8	D	335	338	Right-handed 310
Helix 72	AH9	D	342	346	Right-handed 310
Helix 73	AI1	D	348	352	Right-handed 310
Helix 74	AI2	E	10	15	Right-handed alpha
Helix 75	AI3	E	17	23	Right-handed alpha
Helix 76	AI4	E	26	40	Right-handed alpha
Helix 77	AI5	E	41	48	Right-handed alpha
Helix 78	AI6	E	71	80	Right-handed alpha
Helix 79	AI7	F	16	40	Right-handed alpha
Helix 80	AI8	H	5	11	Right-handed alpha
Helix 81	AI9	H	12	16	Right-handed 310
Helix 82	AJ1	H	27	50	Right-handed alpha
Helix 83	AJ2	I	3	25	Right-handed alpha
Helix 84	AJ3	I	26	30	Right-handed 310
Helix 85	AJ4	K	11	15	Right-handed 310
Helix 86	AJ5	K	17	22	Right-handed alpha
Helix 87	AJ6	K	23	25	Right-handed 310
Helix 88	AJ7	K	26	31	Right-handed alpha
Helix 89	AJ8	K	31	43	Right-handed alpha
Helix 90	AJ9	L	15	39	Right-handed alpha
Helix 91	AK1	M	6	28	Right-handed alpha
Helix 92	AK2	T	3	23	Right-handed alpha
Helix 93	AK3	X	2	16	Right-handed alpha
Helix 94	AK4	X	23	34	Right-handed alpha

There are 8 sheets in PDB entry 6WJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	174	175	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	177	179	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	340	first strand
Strand 2	B	430	433	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	343	347	anti-parallel
Strand 5	B	398	402	anti-parallel
Strand 6	B	410	411	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	182	184	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	330	first strand
Strand 2	C	336	338	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	361	362	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	173	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WJ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJ6