Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WJB entry

There are 2 chains in PDB entry 6WJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LEU 310
B
 ALA 3LEU 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6WJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
40 44Right-handed 310
Helix 3
AA3
A
60 69Right-handed alpha
Helix 4
AA4
A
82 89Right-handed alpha
Helix 5
AA5
A
89 98Right-handed alpha
Helix 6
AA6
A
98 112Right-handed alpha
Helix 7
AA7
A
123 126Right-handed 310
Helix 8
AA8
A
144 165Right-handed alpha
Helix 9
AA9
A
189 200Right-handed alpha
Helix 10
AB1
A
219 232Right-handed alpha
Helix 11
AB2
A
250 262Right-handed alpha
Helix 12
AB3
A
284 291Right-handed alpha
Helix 13
AB4
A
298 310Right-handed alpha
Helix 14
AB5
B
13 26Right-handed alpha
Helix 15
AB6
B
40 44Right-handed 310
Helix 16
AB7
B
60 68Right-handed alpha
Helix 17
AB8
B
82 89Right-handed alpha
Helix 18
AB9
B
89 98Right-handed alpha
Helix 19
AC1
B
98 112Right-handed alpha
Helix 20
AC2
B
123 126Right-handed 310
Helix 21
AC3
B
144 165Right-handed alpha
Helix 22
AC4
B
189 201Right-handed alpha
Helix 23
AC5
B
219 232Right-handed alpha
Helix 24
AC6
B
250 262Right-handed alpha
Helix 25
AC7
B
284 291Right-handed alpha
Helix 26
AC8
B
298 309Right-handed alpha
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There are 10 sheets in PDB entry 6WJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
29 34parallel
Strand 3
A
5 9parallel
Strand 4
A
73 76parallel
Strand 5
A
115 121parallel
Strand 6
A
167 173parallel
Strand 7
A
240 242parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
281 282parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
216 218parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
267 270parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
248 249anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
29 34parallel
Strand 3
B
5 9parallel
Strand 4
B
73 76parallel
Strand 5
B
115 121parallel
Strand 6
B
167 173parallel
Strand 7
B
240 242parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
281 282parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
216 218parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
267 270parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 214first strand
Strand 2
B
248 249anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il