Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WJF entry

There are 4 chains in PDB entry 6WJF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PHE 405
B	ASP 96	PHE 405
C	ILE 104	GLU 398
D	ILE 104	TYR 265

There are 36 helices in PDB entry 6WJF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	9	Right-handed alpha
Helix 2	AA2	A	17	30	Right-handed alpha
Helix 3	AA3	A	39	55	Right-handed alpha
Helix 4	AA4	A	56	86	Right-handed alpha
Helix 5	AA5	A	130	138	Right-handed alpha
Helix 6	AA6	A	139	150	Right-handed alpha
Helix 7	AA7	A	183	191	Right-handed alpha
Helix 8	AA8	A	194	215	Right-handed alpha
Helix 9	AA9	A	273	286	Right-handed alpha
Helix 10	AB1	A	297	307	Right-handed alpha
Helix 11	AB2	A	317	327	Right-handed alpha
Helix 12	AB3	A	356	362	Right-handed alpha
Helix 13	AB4	A	399	403	Right-handed 310
Helix 14	AB5	B	131	138	Right-handed alpha
Helix 15	AB6	B	139	151	Right-handed alpha
Helix 16	AB7	B	182	191	Right-handed alpha
Helix 17	AB8	B	194	215	Right-handed alpha
Helix 18	AB9	B	261	266	Right-handed alpha
Helix 19	AC1	B	272	277	Right-handed alpha
Helix 20	AC2	B	278	286	Right-handed alpha
Helix 21	AC3	B	297	307	Right-handed alpha
Helix 22	AC4	B	317	328	Right-handed alpha
Helix 23	AC5	B	356	362	Right-handed alpha
Helix 24	AC6	C	136	149	Right-handed alpha
Helix 25	AC7	C	151	155	Right-handed 310
Helix 26	AC8	C	157	168	Right-handed alpha
Helix 27	AC9	C	246	271	Right-handed alpha
Helix 28	AD1	C	279	290	Right-handed alpha
Helix 29	AD2	C	375	380	Right-handed alpha
Helix 30	AD3	C	385	391	Right-handed alpha
Helix 31	AD4	C	393	398	Right-handed alpha
Helix 32	AD5	D	136	148	Right-handed alpha
Helix 33	AD6	D	150	155	Right-handed alpha
Helix 34	AD7	D	157	167	Right-handed alpha
Helix 35	AD8	D	220	225	Right-handed 310
Helix 36	AD9	D	247	265	Right-handed alpha

There are 11 sheets in PDB entry 6WJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	106	first strand
Strand 2	A	111	117	anti-parallel
Strand 3	A	123	129	anti-parallel
Strand 4	A	171	175	anti-parallel
Strand 5	A	164	166	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	228	230	anti-parallel
Strand 3	A	234	236	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	107	first strand
Strand 2	B	110	117	anti-parallel
Strand 3	B	123	128	anti-parallel
Strand 4	B	171	176	anti-parallel
Strand 5	B	164	166	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	229	first strand
Strand 2	B	235	236	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	173	first strand
Strand 2	C	240	244	anti-parallel
Strand 3	C	191	192	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	202	first strand
Strand 2	C	207	211	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	295	first strand
Strand 2	C	369	371	anti-parallel
Strand 3	C	314	316	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	173	first strand
Strand 2	D	240	246	anti-parallel
Strand 3	D	188	191	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	228	229	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	209	first strand
Strand 2	D	196	202	anti-parallel
Strand 3	D	213	214	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	209	first strand
Strand 2	D	196	202	anti-parallel
Strand 3	D	233	236	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WJF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJF