Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WJL entry

There are 8 chains in PDB entry 6WJL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	SER 31	LEU 490
H	GLU 1	LYS 214
K	UNK 6	SER 120
L	ASP 1	GLU 213
E	SER 31	LEU 490
F	GLU 1	LYS 214
I	VAL 2	VAL 119
J	ASP 1	GLU 213

There are 52 helices in PDB entry 6WJL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	32	43	Right-handed alpha
Helix 2	AA2	G	70	93	Right-handed alpha
Helix 3	AA3	G	93	130	Right-handed alpha
Helix 4	AA4	G	138	153	Right-handed alpha
Helix 5	AA5	G	159	175	Right-handed alpha
Helix 6	AA6	G	176	178	Right-handed 310
Helix 7	AA7	G	208	242	Right-handed alpha
Helix 8	AA8	G	247	252	Right-handed alpha
Helix 9	AA9	G	258	264	Right-handed alpha
Helix 10	AB1	G	272	285	Right-handed alpha
Helix 11	AB2	G	289	309	Right-handed alpha
Helix 12	AB3	G	313	341	Right-handed alpha
Helix 13	AB4	G	386	400	Right-handed alpha
Helix 14	AB5	G	407	413	Right-handed alpha
Helix 15	AB6	G	446	451	Right-handed alpha
Helix 16	AB7	G	466	470	Right-handed 310
Helix 17	AB8	G	475	487	Right-handed alpha
Helix 18	AB9	H	61	64	Right-handed 310
Helix 19	AC1	H	83	87	Right-handed 310
Helix 20	AC2	H	156	158	Right-handed 310
Helix 21	AC3	H	202	204	Right-handed 310
Helix 22	AC4	K	62	65	Right-handed 310
Helix 23	AC5	L	79	83	Right-handed 310
Helix 24	AC6	L	124	127	Right-handed 310
Helix 25	AC7	L	183	188	Right-handed alpha
Helix 26	AC8	E	33	40	Right-handed alpha
Helix 27	AC9	E	41	43	Right-handed 310
Helix 28	AD1	E	70	93	Right-handed alpha
Helix 29	AD2	E	94	129	Right-handed alpha
Helix 30	AD3	E	140	153	Right-handed alpha
Helix 31	AD4	E	159	175	Right-handed alpha
Helix 32	AD5	E	176	178	Right-handed 310
Helix 33	AD6	E	208	242	Right-handed alpha
Helix 34	AD7	E	247	259	Right-handed alpha
Helix 35	AD8	E	259	264	Right-handed alpha
Helix 36	AD9	E	272	285	Right-handed alpha
Helix 37	AE1	E	290	308	Right-handed alpha
Helix 38	AE2	E	312	335	Right-handed alpha
Helix 39	AE3	E	335	340	Right-handed alpha
Helix 40	AE4	E	386	398	Right-handed alpha
Helix 41	AE5	E	399	401	Right-handed 310
Helix 42	AE6	E	403	413	Right-handed alpha
Helix 43	AE7	E	446	451	Right-handed alpha
Helix 44	AE8	E	464	470	Right-handed alpha
Helix 45	AE9	E	476	487	Right-handed alpha
Helix 46	AF1	F	61	64	Right-handed 310
Helix 47	AF2	F	83	87	Right-handed 310
Helix 48	AF3	F	156	158	Right-handed 310
Helix 49	AF4	F	187	189	Right-handed 310
Helix 50	AF5	J	79	83	Right-handed 310
Helix 51	AF6	J	124	127	Right-handed 310
Helix 52	AF7	J	183	189	Right-handed alpha

There are 27 sheets in PDB entry 6WJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	68	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	71	72	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	137	145	anti-parallel
Strand 3	H	176	183	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	137	145	anti-parallel
Strand 3	H	176	183	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	154	first strand
Strand 2	H	196	200	anti-parallel
Strand 3	H	205	207	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	19	first strand
Strand 2	K	79	83	anti-parallel
Strand 3	K	69	72	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	38	first strand
Strand 2	K	46	50	anti-parallel
Strand 3	K	59	60	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	97	99	first strand
Strand 2	K	108	111	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	29	anti-parallel
Strand 3	L	68	75	anti-parallel
Strand 4	L	62	66	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	88	anti-parallel
Strand 4	L	35	38	anti-parallel
Strand 5	L	45	46	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	49	first strand
Strand 2	L	53	54	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	150	first strand
Strand 2	L	191	197	anti-parallel
Strand 3	L	205	210	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	107	111	parallel
Strand 3	F	88	95	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	124	first strand
Strand 2	F	135	145	anti-parallel
Strand 3	F	176	185	anti-parallel
Strand 4	F	164	165	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	124	first strand
Strand 2	F	135	145	anti-parallel
Strand 3	F	176	185	anti-parallel
Strand 4	F	169	170	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	154	first strand
Strand 2	F	195	199	anti-parallel
Strand 3	F	207	210	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	21	23	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	46	51	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	92	95	anti-parallel
Strand 5	I	115	117	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	69	71	first strand
Strand 2	I	80	82	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	29	anti-parallel
Strand 3	J	62	75	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	102	106	parallel
Strand 3	J	85	88	anti-parallel
Strand 4	J	34	38	anti-parallel
Strand 5	J	45	49	anti-parallel
Strand 6	J	53	54	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	118	first strand
Strand 2	J	129	139	anti-parallel
Strand 3	J	173	182	anti-parallel
Strand 4	J	159	163	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	145	150	first strand
Strand 2	J	191	197	anti-parallel
Strand 3	J	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WJL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WJL